Cannabis sativa (hemp): 115711315
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Entry
115711315 CDS
T08987
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csav04121
]
115711315
Ubiquitin system [BR:
csav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115711315
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT140_1st
ANAPC3
PROPPIN
TPR_2
Motif
Other DBs
NCBI-GeneID:
115711315
NCBI-ProteinID:
XP_030495516
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All DBs
Position
X:complement(55437388..55458230)
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AA seq
755 aa
AA seq
DB search
MEPWPFHDGNIYDLLHRRYLHGPQDANRSFQLHSSLIRRLSQEKELEGHEGCVNAIAWNS
SGSLLISGSDDTRINIWSYAGRNLLHSLETGHCANIFCSKFIPETGDELVVSGAGDAEVR
LFNLSRLSGRGADDSAIAPSATYQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG
SSCPPAGSSHQECRNILIDLRCGAKRSLADPPRQNFALKSCDISATRPHLLLVGGSDAFA
RLYDRRMLPPFSSSQKKMPPPPCVDYFCPMHLSDHAHSSLHLTHVAFSPDGEEVLLSYSG
EHVYLMDINHAGDSSMQYSPADVSQLTSFTTRLDRGELTSEVGLKGHSKERSAALDMCKK
LLQIAERSLEGDMNYYFGIEACDDVLNGYGQFIGPALKHDCLCMRAALLLKRNWKNDGHM
AIRDCHNARKIDGSSFRAHYYMSEALSQLGRHKEALDFACAAQNLAPSNSDVEERVERVK
KDIAAGEAERNKKENEGILRSEPRGEAMPSLSDIFYRVEANSDDSPRSEREDSDYEEELE
LDFDTSMSGDEEHDVEPNILHGSLNLRIHRKNDSSRESGGANGSCGSPSSSSCNDRAPYQ
PGIAIDMKQRYVGHCNVGTDIKQANFLGQRGEYVASGSDDGRWFIWEKKTGRLIKMLHGD
NAVVNCVQPHPFDCAVATSGIDNTIKIWTPTASVPSIVASGAVGPESADFLAAMEGNQRR
LGRNRDAILGFEILERFRVHEFTEGNLHPFECAQS
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggaaccctggccttttcacgacggtaatatctacgatttgcttcacagacgatacctc
catggccctcaagatgcaaatcgcagttttcagcttcattcatcactgatacgaaggctt
tcacaggaaaaagagttggaggggcatgaaggttgtgttaatgctattgcttggaattcc
agcggttcacttctgatatccggatcagatgacacacggattaatatatggagctatgct
ggcaggaaccttttgcattccttagagactgggcattgtgcaaatatattttgtagcaaa
tttattcctgagactggtgacgaacttgtggtttctggagcgggagatgcagaagttcgg
ttatttaatttgtctcgattaagtgggagaggagctgatgacagtgctattgctccatca
gctacgtatcaatgtcatacaagaagagtcaagaagttggctgttgaagttggaaaccct
aacgttgtatggagcgcaagtgaagatgggacattgaggcaacatgattttcgagaaggc
tcttcatgtcctcctgctggatcttctcatcaagaatgtcgcaatattttgattgacttg
aggtgtggagcaaagaggtctctagctgatcctccaagacaaaattttgctctaaagtct
tgcgatattagtgccaccaggcctcatttgctcctagttggtgggagtgatgcgtttgca
cggttgtacgacagaaggatgctgccaccgttctcttcaagtcagaaaaagatgccacct
cctccttgtgttgactatttttgtcccatgcatctttctgaccatgcacattcaagcttg
catttaactcatgttgcgtttagtccagatggagaagaggttctacttagttacagtgga
gagcatgtctatttgatggatataaatcacgcaggtgatagttctatgcagtatagccct
gcagatgtttctcagctgacaagcttcacaactaggcttgacagaggtgaactgacatct
gaagttggcctaaagggtcattctaaggagagaagtgctgctcttgacatgtgtaagaag
ctactccaaattgctgaaagatccttggagggggacatgaattactatttcggcattgag
gcttgcgatgacgtgttaaatggatatggtcaatttattggaccagcattgaagcatgat
tgtctctgtatgcgtgctgcgttgttgctgaagcgaaattggaaaaatgatggtcacatg
gcgattagagattgtcataatgctcgaaagattgatggctcctcatttagggcacattac
tacatgtctgaagctctgtcacagttaggaagacataaagaagctctagattttgcttgt
gctgctcaaaatttggctccttctaattctgatgtagaagaaagagttgagagagttaag
aaggacattgctgcaggcgaagcagaaagaaataagaaagaaaatgaaggaattttgagg
tctgaacctcgaggtgaagcaatgccttcattaagtgacatattttaccgggtagaggct
aatagtgatgatagcccaagatctgaaagagaagattctgattatgaagaggaattggaa
ctggactttgacacatcaatgtcaggtgatgaggagcatgatgttgaacccaatattctg
catggaagtttaaatttaagaatccatcgaaaaaatgattcatctagggaaagtggtggt
gcaaatggctcgtgtggatctccctcatcatcatcctgcaatgacagagcaccatatcag
cctgggatagctattgatatgaaacaaagatatgttggccactgtaacgtggggactgac
ataaagcaggctaattttctgggtcaaagaggtgaatatgttgctagtggaagtgatgat
ggcagatggtttatttgggagaagaaaaccggcagattaataaagatgcttcatggagat
aatgcagttgtcaactgtgtgcagcctcatcctttcgactgtgctgttgctacgagtggg
attgataacacaattaagatttggactccaactgcttccgtcccctcaattgtagccagt
ggagcagtagggccagaaagtgctgactttttagctgccatggaagggaaccaacggaga
ttaggccgcaatcgtgatgcaatcctgggttttgaaattcttgagcgctttcgagtgcat
gagttcactgaaggaaacttgcatccattcgagtgtgctcagagctaa
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