Cannabis sativa (hemp): 115711498
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Entry
115711498 CDS
T08987
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115711498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115711498
03036 Chromosome and associated proteins [BR:
csav03036
]
115711498
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115711498
Coactivators
SAGA/TFTC/STAGA complex
115711498
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115711498
STAGA complex
115711498
TFTC complex
115711498
SAGA complex
115711498
SLIK complex
115711498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
WD40_like
Beta-prop_Nup120_160
PALB2_WD40
ARMC9_LisH
LisH
Beta-prop_VPS8
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
115711498
NCBI-ProteinID:
XP_060968908
LinkDB
All DBs
Position
3:complement(2621842..2628714)
Genome browser
AA seq
672 aa
AA seq
DB search
MDEENILKFVTEYLKKKGFKQTEHAFQEELHQQLPLLPNSSSSSTSLFDADIAKQLLSFS
ESEIGPVRYQDGYSKLRSWTYSSLDLYRHELLRVLYPVFIHCYMDLVAKGHIQEARSFFN
SFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYELLLQFLHKSQ
STTVLGIINEHINFQVSPGQPSSISDDADAVTLTGNGQDAVSQINQKEIHWGLLEDSLEE
RLEKTGGLLSDSEKPEGETKESEWEENKKRSADGGKQGSIVKKVKKDKATGATGKATRPE
TNIVTMAPRVKPELPLPTIPVEVEQSILDDLRNRVQLSGVALPSVSFYTFINAHNGLNCS
TISHDGSLVAAGFSDSSLKIWDMEKLGQQSVGSVLQGDDNATPVEFGSNGVKRPYTLFQG
HSGPVYSASFSPMGDFILSSSADSTIRLWSTTLNANLVCYKGHNYPVWDVQYSPVGHYFA
SASHDRTARIWSMERIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQTGDC
VRIFIGHRSMVLSLAMSSDGRYMASGDEDGAIMMWDLSSGRCVAPLLGHTSCVWSLAFSG
EGSILASGSADCTVKLWDVTTSTKVSKTEEIKSGNTRLRLLKTLPTKSTPVYSLQFSRRN
LLFGAGVLSKSV
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagagaacatactgaaattcgtgacggaatatctgaagaagaaagggttcaag
caaaccgagcacgctttccaagaagaacttcaccaacaattgcctctacttcccaattcc
tcatcatcatctacttcactatttgatgccgatatcgccaagcagcttctctccttttcc
gaatcggagattggtccagtacgatatcaggatggctacagcaaattgaggtcatggact
tatagctccctagatttgtacaggcatgaattgcttcgtgttctatatccggtgtttatc
cattgctatatggatctagtcgcaaagggtcatattcaagaagctcggtcatttttcaat
agctttcgtgaagaccatgaaatgatgcacttacgagaccttcagaaattggagggagtt
ctctctccatctcatttagaggagatggagtttgctcactctcttagacaaagcaaagtc
aatataaagatttgtcagtattcctatgagcttcttctgcaatttctgcacaagtctcaa
tctaccactgtacttggcattatcaatgaacacatcaactttcaagtttctcctggacag
cccagctcaatctctgatgatgcggatgctgttacactgactggaaacggccaagatgct
gtcagtcagattaatcagaaggaaatacattgggggttgctggaagattctttggaagaa
cgtttggaaaagactgggggtttgctttctgattctgaaaagccagaaggagaaactaaa
gagtccgagtgggaggaaaataagaaaagatcagcagatggcggaaagcagggttcaata
gttaaaaaggtgaaaaaagataaggcaacgggagcaacagggaaagccactcgccctgag
acaaacattgtaactatggcaccaagagtcaaaccagagcttcctttgcctacaattcca
gttgaggttgagcagtctatacttgatgacttaagaaatcgtgtacagctgagtggtgtt
gctcttccatctgttagtttctatacattcatcaatgcacataacggtttaaactgttca
actatatcccatgatgggtcattggttgctgctggattttcagattcttcgctaaagatt
tgggatatggaaaagcttgggcaacagtctgttggttctgttttgcagggtgatgataat
gcaactccagttgagtttggttcaaatggagtaaaaagaccatataccttatttcagggg
cattcaggaccagtttattcagcttcttttagtcctatgggagattttatactttcctct
tcagctgattcaacaattcggttatggagcactacgctaaatgcaaatcttgtttgctac
aagggtcataattaccctgtatgggatgtacagtatagtcctgtaggacactatttcgct
agcgcatcacacgaccggacagcaaggatatggtctatggaaagaatacaacctttgcga
ataatggcggggcatttatccgatgttgattgtgtgcaatggcatgccaactgcaactac
attgccaccggttcaagcgacaaaacagttcgactatgggatgtccagactggtgattgt
gtcagaatattcattggtcacaggagcatggtgttgtctttggcaatgtcatccgatggt
cgctatatggcttctggtgatgaagatggtgcgatcatgatgtgggatctttccagcggc
cgatgtgttgctcctttgttgggtcacacttcttgtgtgtggagtcttgcttttagcggt
gaaggttcaattcttgcatctgggtcggctgattgcacagtgaaactatgggatgtaaca
acaagcacaaaagtttcaaagactgaggaaatcaaaagcgggaatacaagacttcgattg
ctgaaaactctacctacgaaatcgaccccggtctacagtttgcagttttctcggagaaat
cttttattcggagctggggtcctttccaaatcagtataa
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