Cannabis sativa (hemp): 115711551
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Entry
115711551 CDS
T08987
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115711551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115711551
03019 Messenger RNA biogenesis [BR:
csav03019
]
115711551
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115711551
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115711551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
115711551
NCBI-ProteinID:
XP_030495762
LinkDB
All DBs
Position
3:complement(11652071..11659050)
Genome browser
AA seq
1079 aa
AA seq
DB search
MEMESSRRPFDRSREPGLKKPRLNEEPERGGLSSNPNTRSFPQRPTGNNPLVSSRSSSGG
GGGYQPQPLSQHQQQQQQHQELVSQYKTAIAELTFNSKPIITNLTIIAGENLHAAKAIAG
TVCHNILEVPSDQKLPSLYLLDSIVKNIGRDYIKNFAARLPEVFIKAYRQVDPPVHTSMR
HLFGTWKGVFPSHTLQMIEKELGFVPAANGSSTANTTSRPDSQSNRPLHNSIHVNPKYLE
GQRLQQLNRAKGLATDVSGSIANSVEDVENMDRATDINTGRAWADPSSKLNRSQRGTSSE
GIHEKSTAGEYADYDYSSDFPRNSGFGIGRGGVRVSESEHDKLWHGDGGNFAESVSGQRN
SFSIKHGFPNYPAPKSTNVVNTSLQSAQNVTSRSSGGVSSSSWKNSEEEEFMWDGMNSRS
SDHGASVISSKLRKDRSASDDSDKSGFEDHVKPQSLHDYTPRGDKEASIDSLSVEHKDLP
GLGHRISSPWLLQEPQLTDGLPRPVSSSIGFTTNAVLGSSGALTQQRFQSLKSGQSSLRQ
RPPSPTLTARHPLLSSQNSTDHERVKAHSLSHPDSKVFSGQLNLGVPNIHTQDSLPISSS
HVRQGKMAKSLPHDVQASSPSVPTFPLRHASFSQQAEDSTESDPLGLIQKTSLPQVSVSG
ILSTNSRSASERSPLTVETLGDSSTASLLAAVMKSGILSKSSITNSSLPNLNFPDSGQLP
SQSSQPPLPSGRTPTQVMNSGFRATSTSSSGHSSYDGLSASSKIPKKKVEQPSNQPARPL
SSSPAGGASENVSNVAKKASDPISNLLSSLVAKGLISASKTELPAVIPPEVPPQTQKKSR
TVTSTGSVPLSSVSASPVFSIKNDGSSLSKPDSSVVNPQSTKPEKPQSTNLEIKNLLGFD
FKQDKIREFHSSVVSELLDGFEHQCAVCSLKLKHPDQLKRHLEWHDLKKANDSTKASRNW
YFNSRDWVAGVGCPSGFELAKSVDKPVMTIDKDEPMVPADESQCVCVLCGEIFEDFYCEE
TDEWMFKGALHMIIPSGTGELASNDKNVSKGPIVHKNCVSESSLPDLGLVSNIKMEQDV
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggaaagctctcgaagacctttcgatagatcaagagagccaggccttaagaaa
ccccgattgaatgaagaaccagagcgaggaggtctcagttcgaatccaaacacccggtct
tttccgcaaagaccaactgggaacaaccctttggtttcaagtcgcagcagcagcggcggc
ggcggagggtatcagccgcagcctttgtcgcagcatcagcagcagcaacaacaacatcag
gagcttgtgagccagtacaagactgcgattgcagagctgactttcaattcaaagcccata
attaccaatctgactataatcgcgggagagaatctccatgctgccaaggcaattgctggg
actgtatgccacaacattctcgaggtcccgagtgatcaaaagctaccatcgctttatctt
ttagacagtatcgtaaagaatattgggagggactacataaaaaactttgctgcgagatta
cctgaggtattcatcaaggcatacaggcaggttgatcctcctgtacatacgagcatgcga
catctttttggaacatggaaaggagttttcccttctcacacacttcagatgattgagaaa
gaacttggttttgttcctgcagcaaatggttcgtctacagctaatacaacatctaggcct
gattcacaatcaaatcgtccactgcataatagtattcatgtcaatcccaaatacttggaa
gggcagcgtcttcagcagcttaatagggcaaaaggactggctactgatgtatctgggtct
attgcaaactcagttgaggatgtagagaacatggacagagcaacagatatcaatactgga
cgagcatgggctgatccgtcttctaaattgaaccgttcacaaagaggtacatccagtgag
ggtattcatgagaagagcactgctggagagtatgcagactatgactacagctctgatttt
ccaaggaattcaggcttcgggattggaagaggtggtgtaagagtttctgagtcagaacat
gataaactttggcatggagatggtggcaactttgctgaatcagtatctggtcaaagaaat
agtttcagtattaagcatggatttccaaattatccagctcctaaatctacaaatgttgtc
aacactagtcttcagtcagcacaaaacgttacaagtagaagcagtggtggggtgtctagc
agcagctggaaaaattctgaggaagaagaattcatgtgggatggtatgaactctagatcg
tcagaccacggtgcatcggtcatatctagtaaattgagaaaagatcgttcagcttctgat
gattcagacaaatctgggtttgaagatcacgttaaaccacaaagtttacatgattataca
ccaaggggtgataaagaggcttctattgattcactttctgttgaacacaaagatctacct
ggtcttgggcatcggatatcatctccgtggttgttgcaggaaccccagttgactgatggg
ttgccccgtcctgtgagttcaagcattggcttcacaacaaatgctgttttagggtcttct
ggggcacttacacaacaacggtttcaatctttaaagtctgggcagtcatcattgagacag
cggccaccctcacctacattaactgcacgccatcctcttctttcatcgcaaaattcaaca
gatcatgaacgtgtgaaggcacattctcttagtcatcctgattctaaagtattttcaggg
caattgaatctgggggtgcctaacatacatactcaggattcattgcccatctcatcctcc
catgttcgacagggaaaaatggcaaaatcactgccccatgatgtacaagcttcttctcct
tcagttcccacttttccgctgaggcatgcttccttttcacagcaagcagaagattctaca
gagtctgatcctttaggtctaattcagaaaacttctctacctcaggtttctgtttcaggg
attctgtcaacaaacagtaggtctgcatcagagcgctctcctcttactgtagaaacttta
ggagactcaagcacagctagtctactggctgctgttatgaaatctggaattctttctaag
agttcaattaccaatagtagtctacctaacctgaactttccagactcagggcagttgcca
tcacagtcaagtcagcctccacttcccagtggacgtactcctactcaggtcatgaactca
gggtttagggctacatcgacatcttcatcaggtcattcctcctatgatggcttgtcagca
tcctctaagatacctaaaaagaaggtagagcagccgtcaaatcaacctgctcgaccacta
tcttcgtctcctgcaggtggtgcatcagaaaatgtttcgaatgttgcaaagaaagcctct
gatccaatatctaacctccttagctcgttagttgcaaagggtttgatatctgcatcaaag
acagaattgcctgctgtgattccacctgaagttcctcctcaaacacaaaagaagagcagg
actgttactagcacaggctctgtcccattgtcctcagtttcagcttcccctgttttttca
atcaagaacgatggctcatctctctcaaaacctgattccagtgttgtcaatcctcagtcc
acaaaaccggagaaaccccaatcaaccaacttggagattaagaatcttctaggctttgac
ttcaagcaagacaagatccgggaatttcattcatctgttgtcagtgaactccttgatggc
tttgaacaccagtgtgctgtatgcagtctaaaactcaaacacccagatcaattgaagaga
cacttggagtggcacgatttgaaaaaagctaatgattccaccaaggcatcaagaaattgg
tattttaattcaagggactgggttgctggagtaggatgtccatcgggatttgagcttgcg
aagtcagtagacaagcctgttatgacgattgataaggacgagccaatggttcctgcagat
gagagtcaatgtgtatgtgttctatgtggtgagatttttgaagatttctattgtgaagaa
acggatgaatggatgttcaagggtgcattgcacatgatcattccttctgggactggtgag
ttagcaagtaacgacaagaatgtgagcaagggccccattgtacacaaaaattgtgtatca
gagagttcactccctgatttgggactggtcagcaatatcaaaatggaacaggatgtatag
DBGET
integrated database retrieval system
