Cannabis sativa (hemp): 115711584
Help
Entry
115711584 CDS
T08987
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115711584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115711584
03012 Translation factors [BR:
csav03012
]
115711584
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115711584
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115711584
Translation factors [BR:
csav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115711584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
AAA_16
T2SSE
ATPase
ATPase_2
Dicer_dimer
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
115711584
NCBI-ProteinID:
XP_030495807
LinkDB
All DBs
Position
3:78584813..78604442
Genome browser
AA seq
1221 aa
AA seq
DB search
MPCSTLFHGYIRTMSLGPTTTTSSLALFKTHNKTIAVKPHLLLGFFARHRTYRTHNVGFW
NVYRAPRHLSCRELTCLSSSGTVEVDGGQRRQRHRHKGAATLPFWQQQSLNYGRYAYQDV
SSSEDSDRELGSSRKEACGSTLDNIDEWRWKLTMLLRNENEQEVVSREKKDRRDFDQLSA
LAARMGLYCRQYSKVVVFSKAPLPNYRSDLDTKRPQREVIIPYGLQSEVDYHLRAHHSRK
SSSREGLSDNLLSRSSSRDSIVSDERFNEQQEPSGRFSVAMEKILRQKSLNMLDQQQKWQ
ESPEGQKMLELRKSLPAYKEREALLKVISENQVVVVSGETGCGKTTQLPQYILESEIEAA
RGAFCNIICTQPRRISAMSVSERVAAERGEALGESVGYKVRLEGMKGRDTRLLFCTTGIL
LRRLLVDRTLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFS
SFFGGAPTMHIPGFTYPVRALFLENILEITGYRLTQYNQIDDYGQEKSWKMQKQAQSVGK
RKSQIASSVEDALEAADFRDYNPKTRESLSVWNPDSIGFNLIECVLCHIIRKERPGAILV
FMTGWDDINSLKDQLQSHPLLGDPSRVLLLACHGSMPSNEQKLIFDKPEDGVRKIVLATN
MAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECY
HLYPRCVYDAFSDYQLPELLRTPLQSLCLQIKSLRLGSISEFLSKALQPPEPLSVQNAVE
YLKIIGALDEDENLTSLGHNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSSRDPFL
MPFDKKDLAESAKAQFSAREYSDHLALVRAYEGWKEAEREQSGYEYCWRNFLSAQTLKAI
DSLRKQFFYLLKDTGLVDRDRESCNTWSHDEHLIRAIICAGLFPGLCSVMNKERSIVLKT
MEDGQVLLYSNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTAVSDSVLLLFGGSITRGG
LDGHLKMLGGYLEFFMKPALAETYIYLKKELDELIQMKLLDPKLDIQSHPELLSALRLLV
SGDQCEGKFVFGRQIPTPKKAKKEIPPVVKGSNNGSGGNNSKNHLQTLLARAGHESPTYK
TKQLKNNQFRSTVIFNGLDFAGSPCSSKKLAEKDAASQALLWLQGENHSSSSNVDHMSML
LKKTSKKKSQNRKSFQDAKWG
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgccctgttcgactctctttcacggctatatcagaaccatgtctctcggacccactacc
accaccagttctctggctcttttcaagacccacaacaaaactattgcagttaaacctcat
ctgttgctgggattcttcgccaggcaccggacctaccgtactcataatgttggcttctgg
aatgtttaccgggcgccgcgtcacttgtcctgtcgagaactgacatgcttgtcttcttcc
gggaccgttgaggtggatgggggtcagaggcggcagcgccaccggcataaaggggctgct
acgctgccgttttggcagcagcagagtctgaattacggccgttatgcttatcaggatgtg
tcgagcagtgaggattccgaccgcgaattagggtcttctaggaaagaagcgtgtggttca
acccttgataacattgatgaatggagatggaagttaaccatgttgctccgtaatgagaat
gagcaagaagtggtttcaagagagaagaaagacaggcgtgattttgatcaactttcggca
ttggcagccagaatgggtttatactgccgtcaatattccaaagtagtagtctttagtaaa
gcccctctaccaaactaccgatcagatttagatactaagcgcccacagagagaggtgata
ataccatatggacttcagtcagaagtagactatcatcttagagctcatcattctcgaaag
tcaagcagcagggaaggtttatcagataatttattgtcaagatcaagtagcagggatagc
attgtctctgatgagaggtttaatgagcagcaggagccatcaggccgttttagtgttgct
atggaaaaaatccttcgacagaaaagtttgaacatgcttgatcagcagcaaaaatggcag
gaatctcctgaaggtcagaagatgcttgaacttcgtaaaagtcttccagcctataaagag
agggaggcattgctaaaagttatatcagaaaatcaggttgttgttgtttcaggtgaaact
ggctgcggtaaaactacacagcttcctcagtacattttagaatctgagattgaagctgct
cgcggtgctttctgtaatattatatgtacacaacctcggcggatatcagccatgtctgtc
tctgaaagagttgctgcagaaagaggagaggcattgggggaatctgtgggttataaagtt
cgtctggaaggaatgaaaggcagggacactcgacttcttttctgcacaactggcatattg
ttgaggagattgcttgttgatagaaccttgaaaggcgttacacatgtaattgttgatgaa
attcatgaacgtggaatgaatgaagattttcttcttattgttctgaaagaacttcttcct
cgtcgaccagagctaagattaattttgatgagtgcaactcttaatgcggagcttttctct
tctttctttggtggtgctccaacaatgcatattcctggttttacgtacccggttcgagca
ctttttctggagaacattttggaaattacgggatatcggttaactcaatataatcaaatt
gatgattatgggcaagaaaagtcgtggaaaatgcaaaagcaggctcaatctgtaggaaaa
agaaagagccagattgcgtcttcggttgaggacgcacttgaagctgctgattttagggac
tataatccaaagactcgagagtccttatctgtttggaatcctgactcaattggatttaac
cttattgagtgcgtgctttgtcacattatccggaaagaaaggcctggtgctattttagtt
tttatgactggctgggatgacattaactctttgaaggatcagcttcagtcacatcctctc
ttgggagatcctagcagggtattgctgctagcatgtcatggttcgatgcccagtaatgaa
cagaaattaattttcgataagccagaagatggagtgaggaaaattgtacttgctacgaac
atggctgagactagcatcactattaatgatgttgtttttgtggttgactgtggtaaagca
aaagagacatcttatgatgcactaaataacaccccttgtttgcttccatcttggatttca
aaggctgctgcacgacaaagaaggggaagagccggtcgtgttcagccaggagagtgttac
catctatatccaagatgtgtttatgatgcgttttctgattaccagctaccggagcttttg
agaacgccattgcaatccctgtgtttgcaaatcaagagcttacggcttggaagtatttcc
gagtttctatctaaggccctgcaacctccagaacctttatcagttcaaaatgctgttgaa
tatttgaagatcattggagccttggatgaagatgaaaatctaacaagtttaggacacaat
ctgtcaatgcttccagttgagcctaaacttggaaagatgctcatattaggggctattttt
aactgtctcgatcctgtaatgactgttgtcgcgggccttagttccagagatccattcttg
atgccttttgacaagaaggatttagcagagtcagcaaaagctcagttctcagctcgtgag
tacagtgatcatctggcactggttcgcgcctatgagggttggaaagaagctgaaagagag
caatctggttatgagtattgctggcgaaattttctttctgcacaaactttaaaagcaatt
gactctcttcggaaacagttcttttatttgctgaaggatactggtctggttgatcgcgat
agagaaagctgtaacacatggagccatgatgagcatcttatccgtgcaatcatttgtgca
ggcttgttccctgggttatgctctgttatgaacaaagaaagatcaatagtgctaaagaca
atggaggatggccaagtgcttttatattcgaattctgtgaatgctggggtaccgaagata
ccatatccatggttagttttcaatgaaaaggtgaaagtaaactcggttttcctccgagat
tcaactgccgtctctgattctgtgcttcttctatttggagggagcatcactaggggtggc
ctagatgggcatctaaaaatgttaggaggatacttggaattttttatgaaacctgcccta
gcggaaacatacatctatttgaagaaggagctcgatgaacttattcagatgaagctcctg
gatccaaagctagatatacaatctcatcctgagctcctttctgctttgagattactggtt
tcaggggaccaatgtgagggaaaattcgtctttggtcgccagataccaacccctaaaaag
gcaaaaaaagagataccacctgttgtaaaaggaagtaacaatggttcgggtggtaataat
tccaaaaatcatctgcagacattgttagccagagctggacatgaatcacccacttacaag
acaaaacaattgaaaaataatcagttccgttcaactgtcatcttcaatgggttagatttt
gcggggagtccttgcagcagtaagaaacttgcggagaaagatgcagcctcccaggctttg
ctatggttacagggggagaaccattcctcctcctcaaatgtggatcacatgtcgatgctc
ttgaagaagaccagcaaaaagaaaagtcagaataggaagtcttttcaagatgccaagtgg
ggctaa
DBGET
integrated database retrieval system
