Cannabis sativa (hemp): 115711598
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Entry
115711598 CDS
T08987
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115711598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csav03009
]
115711598
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
115711598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_VPS8
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_LRRK2
PEP5_VPS11_N
Beta-prop_DCAF12
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_WDR75_2nd
WD40_like
Nbas_N
VID27
Beta-prop_IP5PC_F
DUF7099
VPS8_N
WDCP
Motif
Other DBs
NCBI-GeneID:
115711598
NCBI-ProteinID:
XP_030495824
LinkDB
All DBs
Position
3:40595230..40601676
Genome browser
AA seq
915 aa
AA seq
DB search
MGIFEPFRAIGYITSGVPFSIQRLGTETFVTVSVGKAFQIYNCAKLALVLVGPQLPKKIR
ALASHRELTFVAYGNEIAVFNRAHQISTWSRHPAKINSLLLFGDHILSIDVEGNIFIWAF
KEIDQNPAPVGHIVLDDNFTPSCMMHPDTYLNKILIGSQEGSLQLWNISTKKKLFEFKGW
NSAITSCVSSPALDVVAIGCADGTIHVYNIRYDEELVMFTHSTRGAVTTLSFSTDGQPLL
ASGGSSGVISVWNLEKRRLQSVIRDAHDSSILSLHFFANEPVLMSSSTDNSIKMWIFDTS
DGDPRLLRFRSGHSAPPKCIKFYSNGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR
AKKLKMKVEEIKLKPVIGFDCAEIRERDWCNVVTCHMDTPQAYVWRLQNFVLGEHILKPS
AESPTPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGSYRDTSEKRSCAHDGEVVGI
ACDSTNTLMISAGYQGDIKVWDFKRYELKSRWEVGCSVVKIVFNRLNGLLATVSDDLVIR
LFDVVALRLVRKFEGHTDRITDMCFSEDGKWLLSSSMDGTLRIWDVVLARQIDAIHVDVA
ITALALSPNMDIFATTHVDQNGVYLWVNQSMFSGATNVDSYASGKEIVRVKLPSVSSAKE
SEDDDDSEKPTVNAPQTKDSIAPFRILDHQIPDLVTLSLLPKSQWQSLINLDIIKVRNKP
IEPPKKPEKAPFFMPSIPSLSGEILFKPSDLSNEETKNNEQVEKHGGKSDMPLSEFLRAL
HSAAKNKDFSTFTDHIKSLSPSTLDMELRMLEIIDEVDDADDDNNDEERPELLSIEMLLD
YFIEEISCRNNFEFVQAVMRLFLKIHGETIRCKSGLQEKAKKLLEIQSKVWEGVDKLFQS
SRCVLSFLTNSHIII
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgggaatctttgagccctttagggctattggatacattaccagcggtgttcctttctct
attcagcgattaggcaccgaaaccttcgtcaccgtcagtgttggcaaggcttttcagatt
tacaattgcgcaaagctcgctttggtgcttgttggtccacaactgccaaagaagatcaga
gctcttgcttcacatagagaacttacatttgttgcttatgggaatgagatagctgtattt
aatcgtgctcatcagatatcaacttggagtaggcatccagcaaagatcaattctttgcta
ttgtttggagaccacattctaagtattgatgttgaaggtaatattttcatatgggcattt
aaggaaattgatcagaatcctgcaccagttggacatatcgtcctagatgacaattttact
cctagctgtatgatgcatcctgatacttacttaaataagattcttattgggagtcaagaa
ggttctctacagctttggaacatcagtacgaagaaaaaattattcgagtttaagggatgg
aattctgcaattacaagttgtgtttcgtctcctgctttagatgtagttgctattggttgt
gctgatggaactattcatgtttacaatattcgttatgatgaagaattagttatgtttact
cattctacccgaggtgctgtgaccacattatcttttagcacagatggacagcctcttctg
gcatccggtggttcatctggtgtcatatctgtatggaatcttgagaaaagaaggctccaa
tcagttataagagatgctcatgatagttcaattctttcactccacttcttcgccaatgag
cccgtattaatgagttcatcaactgacaattccattaaaatgtggattttcgacacaagt
gatggagatcctcgtcttctacgttttagaagtggccacagtgctcctccaaaatgcata
aagttctattccaatggaagacacattttatctgccggacaggatcgcgcctttcgcctt
ttctctgtgatccaggatcaacaaagtagagagctctcccaacgccatgtggcgaaacgg
gccaagaaactgaagatgaaggtagaagagattaaactgaagcctgttatcgggtttgac
tgtgctgaaattagagagcgagattggtgtaatgtggttacatgtcacatggatactcca
caggcctatgtgtggagacttcaaaactttgttctcggtgagcatattctaaaacctagc
gccgaaagtccaacaccggttaaggcctgtgccattagtgcatgtggaaatttcgcggta
ctaggaactgcaggtggttggattgaacgatttaaccttcagtcaggaatcagccgaggc
agttaccgtgatacttcagagaaaagaagctgtgcccacgatggggaagtggttggaatc
gcttgtgattcaacaaatactttaatgataagtgctggatatcaaggagacataaaggtc
tgggatttcaaacgatatgaactaaaatcccgatgggaagttggttgttctgttgttaaa
atagttttcaatcgtctcaatggtcttttggctaccgtatccgatgatctagtcattcga
ttatttgatgttgtggcattgagattagttcgtaagtttgaaggccatacagaccgtatc
accgatatgtgttttagtgaggatgggaaatggcttttatcgtcgagtatggatggaact
cttcgaatttgggacgttgttttggctcgacaaatagacgcaatacatgttgatgtggct
atcacagcattggctctatcaccaaatatggatatttttgcaacaacccatgttgatcaa
aatggggtttatctatgggtaaatcaatcaatgttctctggtgctaccaatgttgattcc
tatgccagtgggaaggagattgtgagagttaagttaccatctgtctcttcagcaaaagaa
tctgaagatgatgatgattctgaaaagccaacagtgaatgccccgcaaactaaggattcg
atcgccccctttcggattctcgatcatcaaatcccagatcttgttactctttctcttttg
cctaaaagtcagtggcagagtttgattaatttagacattattaaggtgagaaacaaacca
atcgaaccaccaaagaaacccgaaaaggctccgttctttatgccttcaattccatctctt
tctggagaaatattgtttaaacctagtgacttatcaaacgaggagacgaagaacaacgaa
caagtggaaaaacacggtggaaaatctgacatgcctttatccgaattcttgcgagctcta
cactcagctgccaaaaataaagatttttcaacattcactgatcatattaaaagcctatct
ccttcaaccttggatatggagcttcgaatgcttgagatcatagacgaagttgatgatgct
gacgacgacaacaatgatgaggaaagacccgagttgttatcgatcgaaatgcttttggat
tattttatagaggagatctcatgcaggaacaattttgagtttgtacaagctgtgatgaga
ttgtttctaaagattcatggggagacaataaggtgcaaatcaggattacaagagaaggca
aagaagcttttggagatacaaagcaaagtatgggaaggagttgacaaattgttccaaagt
agtagatgtgttttaagtttcctaaccaactcacatatcatcatctaa
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