KEGG   Cannabis sativa (hemp): 115711959
Entry
115711959         CDS       T08987                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    115711959
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csav03019]
    115711959
   03036 Chromosome and associated proteins [BR:csav03036]
    115711959
Messenger RNA biogenesis [BR:csav03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     115711959
Chromosome and associated proteins [BR:csav03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     115711959
    COMPASS/SET1 complex (yeast)
     115711959
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta EIF3I WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_EML Beta-prop_SPT8 Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_ACSF4 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 KNTC1_N Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_IFT140_1st Cytochrom_D1 Beta-prop_WDR35_TULP_N DUF5812 Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 115711959
NCBI-ProteinID: XP_030496019
LinkDB
Position
4:complement(78567208..78570624)
AA seq 330 aa
MAGSEREDKVSLELTEEILQSMEVGMAFKDYSGRISSIDFHKTSTYLVTASDDESIRLYD
VASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD
RVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFSIAFGG
YIRMFDARMYEKGPFDIFSVGGDVSDANVIKFSNDGRLMLLTTMDGHIHVLDSFRGTLLS
TYNVKPVSKNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSAENEPPVIKWA
PGNLMFVTGSSELSFWVPDLSKLGAYVGRK
NT seq 993 nt   +upstreamnt  +downstreamnt
atggcgggttccgaaagagaagataaggtctcattggagcttaccgaggaaattcttcaa
agcatggaagttggcatggctttcaaagattacagtggtagaatcagttcaatagacttt
cacaaaacatccacttatctagttactgcaagtgatgatgagtccatacgcttgtatgat
gtagcaagtgcaacttgcttgaagacaattaacagcaaaaagtatggagttgatcttgtt
tgctttacatctcaccctacaacagtcatttactcttcaaaaaatggttgggatgaatcc
ttgaggcttctatcattacatgacaataagtacttgcggtattttaaaggtcatcatgac
agggttgtatctcttagcttgtgtgctcgcaaggaatgctttatctcaggctctcttgat
cgaactgttttgctttgggatcaacgagctgaaaagtgccagggtcttttacgtgtgcaa
ggaaggcctgctacagcgtacgatgaccaagggctagttttctcaattgcctttggtgga
tacatacgaatgttcgatgctcgcatgtatgaaaagggtccttttgacattttttctgtt
ggaggagatgtttctgatgctaatgttataaagttcagtaatgatggaagactaatgctt
ttgacaacaatggatggacacattcatgtacttgattcttttcgtggtacacttttatca
acatacaatgtaaagccagtttcaaaaaattccacattagaagcttcattcagtcccgaa
gggatgtttgttatatctggttccggtgatggtagtgtctatgcttggagcgtcagaagt
gggaaggaagtcgcaagttggatgagtgctgaaaatgagccccctgtcatcaaatgggct
cctggaaatcttatgtttgtgactggatcttctgaactatcattctgggttccagattta
tcgaaactcggagcatacgttggaaggaagtag

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