Cannabis sativa (hemp): 115712524
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Entry
115712524 CDS
T08987
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115712524
09123 Folding, sorting and degradation
03018 RNA degradation
115712524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115712524
03041 Spliceosome [BR:
csav03041
]
115712524
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115712524
mRNA cycle factors
Stress granule specific factors
115712524
Spliceosome [BR:
csav03041
]
Complex C
Other components
Complex C specific factors
115712524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_Nup35
RRM_occluded
RRM_RdRP1_2
RRM_7
OB_RNB
RBD_DGKtheta
Cas_Cas2CT1978
Motif
Other DBs
NCBI-GeneID:
115712524
NCBI-ProteinID:
XP_030496675
LinkDB
All DBs
Position
X:complement(346618..350179)
Genome browser
AA seq
646 aa
AA seq
DB search
MAAAAASATVVSGQVAQSSAVAVTGPVTAAGFGNASLYVGDLEPSVDEGQLFEIFNQVAQ
VVSIRVCRDQHRRQSLGYAYVNYANPQDAANALEHLNFTPVNGKPMRIMYSHRDPSIRKS
GYANVFIKNLDTSLDNKNLLDTFAAFGTVLSCKVAVDNNGQSKGYGFVQYDKEESAQKAI
KELNGMLINDKQVYVGLFVRKQERGRSNGSPKFTNVFVKNIADSVSDEILEEVFGAFGTI
TSAVVMRDANGNSRGFGFVNFQSSDAAAVAVEKLNGKVHDDKVWFVGRAQRKSEREAELR
AKFEQERISRFEKLQGANLYLKNLEDNMTDEKLRELFSEFGTITSCKVMIDSQGISKGSG
FVAFSTPEEATKALNEMNGKMLGRKPLYVAVAQRREERKARLQAHFAQIRAPGAMAPLPS
GIPGFHHGAPRLGPQQMYYGQGSPAIIPPQPAGYGFQQQILPGMRPGVAPNFMMPYHLQR
QGQPGQRMGVRRGGNIPQVPQQQLLHQRNPNQGVRYMQNGRNGLEPSMVPQSLVGSIMPL
PFDAPVPASPVEIHRTGPVPMSALASALASATPDNQRLMLGEQLYPLVECLEREHSAKVT
GMLLEMDQTEVLHLIESPDALKDKVAEAMEVLQKASSKPDAADQLG
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcttcagcgacggttgtttctggacaggtggcacagtcctctgct
gtggcagtgacgggtccggttacggcggcgggatttggtaatgcgtcgctttacgttggg
gatctggagcctagcgtggatgaaggacagctttttgagatttttaaccaagtggctcag
gttgtctccattagggtttgcagggatcagcatcggaggcaatctcttggctatgcttat
gtcaactatgctaatcctcaagatgctgctaatgccttggagcatttgaatttcactcct
gttaatgggaaaccaatgagaattatgtattctcatcgagatcctagcataaggaagagt
ggatatgccaatgtgtttattaagaacttggacacatcactcgataacaagaatttgctt
gacacttttgctgcttttggaactgtactttcctgtaaggttgctgttgataacaatggt
cagtcaaaaggttatggctttgtacaatatgacaaggaggaatctgcccagaaagcaatc
aaagagctgaatggaatgctgattaatgacaagcaagtttacgttggactatttgttcga
aaacaggaaaggggtcgatcgaatggatcccccaagtttactaatgtatttgtcaaaaac
attgctgattcagttagtgatgagatccttgaggaagtttttggcgcttttggaaccatc
actagtgctgttgttatgagagatgccaatggcaactctagaggcttcggttttgttaac
tttcagagctcggatgctgctgctgttgcagttgagaagctgaatggtaaggttcatgat
gacaaagtctggtttgttgggagggctcaaaggaaatctgagagagaagctgagttaaga
gctaaatttgaacaagaaagaattagtagatttgaaaagcttcaaggtgctaatctttat
cttaaaaaccttgaagacaatatgactgatgaaaaactgagggagcttttctctgagttt
ggaacgataacatcatgcaaggtgatgattgattcacaagggataagcaagggctctggc
tttgttgccttttccactcctgaggaagctactaaagctttgaatgagatgaatggaaag
atgctaggccgaaagcctctgtatgtggctgttgctcagcggagagaagagagaaaggct
cgtttacaggcccatttcgctcaaattcgagctcctggtgcaatggcacctcttccatca
ggaattcctggattccatcatggtgcaccaagacttggtcctcaacagatgtattatggt
caaggttctcctgccattataccccctcagcctgctggttatggattccagcagcaaatc
ttgcctggaatgcggcctggtgtggctccaaatttcatgatgccataccaccttcagaga
caagggcaacctggtcaaaggatgggggtacgtcgcggtgggaacatcccacaagtgcca
caacagcagctgctgcatcaacgcaaccctaatcaaggcgttagatacatgcaaaatgga
agaaatggtttggagccatcaatggtccctcagagtcttgtaggttcgataatgccattg
ccatttgatgctcccgtgcctgcctctcctgtcgaaattcaccgaactggaccagtgcca
atgtcggcactcgcttctgctttggcttcagctactcccgacaaccagcgattgatgctt
ggagaacagctatatccactggttgagtgccttgagcgggaacattctgcgaaggtgact
ggaatgctgctggagatggaccaaacagaagttttgcatcttatcgaatccccggatgct
ctgaaggacaaggtggctgaagcaatggaagtgcttcagaaagcttcttccaaacctgat
gctgctgaccagcttggttaa
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