Cannabis sativa (hemp): 115712528
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Entry
115712528 CDS
T08987
Name
(RefSeq) polygalacturonase At1g48100
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav00040
Pentose and glucuronate interconversions
csav01100
Metabolic pathways
Module
csav_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
115712528
Enzymes [BR:
csav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
115712528
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Conotoxin
SARAF
GRP
Ac76
DUF4834
DUF2615
Motif
Other DBs
NCBI-GeneID:
115712528
NCBI-ProteinID:
XP_030496677
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All DBs
Position
4:4769781..4773011
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AA seq
486 aa
AA seq
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MKKSKSSSLLILLLILVLIFVITFSTISVEARKHQTKKNKPHNKHKKDNKGGNNSNNNNN
SNSPCPSPVPPHQPPSSSVSNIFNVLSFGAKGDGVSDDSKALLAAWEGACKVSGATVIVP
SKYKFLIKPIILQGPCMPHLIFQIDGTLLAPPKIGSWQKYNLFQWIYFKWINNFTIQGTG
VVDGQGSNWWCLSQVYNTQKKSKYIPDMKPTALRFYSSNDVTVKNIKIINSPQCHLKFDS
SKRIKVDNITISSPENSPNTDGIHLQNSQDVEIHHSNIECGDDCVSIQTGCSNVHVHHMN
CGPGHGISIGSLGKDKTVACVSNIVVENISLKNTLSGVRIKTWQGGIGSVKNVSFSNIQV
SDVKVPIMIDQYYCDKNTYCKNQSGAVGISGIKYDKIIGTFSAQPIHLACSKEIPCIDVD
LIDIQLSPSIGYNNRGLLKQALCSNSYGKSEAPLVPSSIDYCLRSVGGPVRRTERSHEHI
CSTGKY
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaagcaagagctcatcacttcttattcttcttctcatcttggtccttatcttt
gttattaccttttccacaatctcagtcgaagcaagaaaacaccaaactaagaagaacaaa
ccacacaataagcacaaaaaagataacaaaggtggtaacaatagtaacaataataataat
agtaattctccatgtccatctccagtgccacctcatcaacctccttcttcttctgtgtct
aatattttcaatgtcttgtcttttggagccaaaggtgatggagtttcagatgattccaag
gcacttctagcagcatgggaaggtgcatgcaaagtttcaggggcaacagtaatagttcca
tcaaaatacaagtttcttatcaagcccataattcttcaaggcccttgtatgcctcactta
atttttcagattgatggtactctattggctcctccaaaaattgggtcttggcagaaatac
aatttatttcaatggatatactttaaatggatcaataatttcactattcaaggcactggt
gttgttgatggtcaaggctctaactggtggtgtctctcccaagtttacaacactcagaag
aaatccaagtatattccagacatgaaacctactgctttgagattctattcaagcaatgat
gtgacagttaaaaacattaaaatcataaacagtcctcagtgtcatcttaaatttgacagc
tctaagaggatcaaagttgacaatattacaatatcttcaccagaaaatagccccaataca
gatggtattcacttgcaaaactctcaagatgttgagattcatcattcaaatattgagtgt
ggagatgactgtgtatccatacaaactggttgctcaaatgttcatgttcatcatatgaat
tgtggccctggacatggtataagcataggaagtctaggaaaagacaaaacagttgcttgt
gtttccaatatagttgttgaaaatatttcacttaaaaacactctatcaggagtaagaatc
aaaacttggcagggaggaattggatcagtgaaaaatgtatcattctcaaatatccaagtt
agtgatgtgaaagttcctataatgatagaccaatactattgtgacaagaacacatattgc
aagaaccaaagtggggcagtgggaatttcaggtattaagtatgataaaataataggaaca
ttctcagctcagccaattcaccttgcttgtagcaaagaaattccatgcatagatgttgat
ctaattgacatacaactaagcccttcaattgggtacaacaacagaggattattaaaacaa
gcactgtgttcaaactcatatgggaaatcagaggcaccattggtcccttcaagtattgat
tattgcttaagaagtgttggtggtccagttagaagaacagaaaggtcacatgaacatatt
tgctctactggcaaatactag
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