Cannabis sativa (hemp): 115712582
Help
Entry
115712582 CDS
T08987
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115712582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115712582
03012 Translation factors [BR:
csav03012
]
115712582
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115712582
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115712582
Translation factors [BR:
csav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115712582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
NACHT
AAA_19
Dicer_dimer
ATPase
T2SSE
ABC_tran
AAA_11
Myosin_head
PhoH
Motif
Other DBs
NCBI-GeneID:
115712582
NCBI-ProteinID:
XP_030496741
UniProt:
A0A803PHP9
LinkDB
All DBs
Position
4:complement(745173..754096)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKDRPPPPSYGAVYVPPHHRLRSVITCPNYTSSASFGSSNFKENQTAAITTGATYFQPQQ
DHFHKPNSPYISSYDDGVSEEGSDREFDSYSQPKKNYALQGAVPFNSVEQWKRNLTILLR
DNDKQELISREKKDRRNFEEISALASKVGLYSHLYARVLVVSKIPLPNYRFDLDDKRPQR
EVTLPLSLLRRVESFVSRFLSQKSWSRDNNSDVSFSRSSSSCSIATEEGLFEAPEPLASS
KGMMEKVLWRRSMQLRDQQRAWQESSEGRDMLEFRKSLPAYKERDAVLSAISQNQVIIIS
GETGCGKTTQIPQFVLESEIESGHGASCNIICTQPRRISAMSVSERVASERGEQLGESVG
YKVRLEGVKGRDTRLLFCTTGILLRRLLVDRSLKGVSHVIVDEIHERGMNEDFLLIVLKD
LLPRRPELRLILMSATLDADLFASYFGTAQILHIPGFTYPVRTHFLEDILEGTGYKLTPY
NQIDDYGQEKMWKMSKQAPRKRKSQIASVVEDALKAADLKDYSNQTRESLACWNPDCIGF
NFIEYLLCYICENERPGAVLVFMTGWDDINSLKDKLLAHPLLGDQTRVLLLACHGSMASS
EQRLIFDEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWI
SKVSAQQRRGRAGRVQPGECYQLYPRCVYNAFVEYQLPEILRTPLQSLCLQIKSLNLGSI
SEFLSRALQSPELLAVQNAIEYLKVIGALDENENLTVLGRYLTMLPVEPKLGKMLLLGAI
LNCLDPILTVVSGLSVRDPFLTPFDKKDLAEAAKSQFSRDYSDHLALIRAYEGWKNAERE
YAGYDYCWKNFLSLQSMKAIDSLRMEFYSLLRDTGLVDSNSTSYSAWSYDEHLVRAVICY
GLYPGVCSVVHNEKSFSLKTMEDGQVLLYSNSVNSREAKIPYPWLVFNEKIKVNSVFLRD
STAVNDSMLLLFGGSISSGDIDGHLKMLGGYLEFFMKPAVAEMYQCVRRELDDLIQSKLL
NPRMAINTHHELLSAVRLLISEVNCEGKFVFGHQVLKSTKSCVTTSTQPVAPSRTESGPG
GDNSKSQLQTLLTRAGYNTPTYKTKQLSNCQFLATVEFNGMQIVGHPCTNKKSAEKDAAA
EALQWLMGETRKGNEYINHMSMMLKKSKKDHY
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccgaccacctccaccatcgtacggcgccgtttacgttcctcctcaccaccga
cttcgctctgtcataacctgcccaaattatacctcctctgcttcttttggttcttccaac
ttcaaggaaaatcagaccgccgccattaccactggtgctacttactttcagccgcagcag
gaccacttccataagcccaattcgccctacatttcttcttacgacgatggtgtttccgaa
gaagggtctgatcgtgaattcgattcttattcccaaccgaaaaaaaactatgctttgcag
ggtgccgttccttttaatagtgttgaacagtggaagaggaacttaactattcttttaaga
gacaatgataagcaagagttgatttctagggagaaaaaggatagacgtaactttgaggaa
atatctgctttggcgagcaaagtgggactctatagccatctatatgcaagagttcttgtt
gttagtaagatacctctaccaaactatagatttgatctggatgataagcgtccacagagg
gaggttactttgcctcttagcctactcagaagggttgaatcattcgttagcaggttccta
tctcaaaagtcttggagtagggataataattcagatgtttctttttcaagatcaagcagt
agctgtagcattgccaccgaggaagggctttttgaggcacctgaaccactggcatctagt
aagggtatgatggagaaagttctttggcgaagaagcatgcagttgagggatcagcaacga
gcttggcaggaatcttctgaaggcagagatatgctggagtttcgtaaaagtcttcctgct
tataaggagagggatgcagtgttatcagctatttcacaaaatcaggtgattattatttcc
ggtgaaactggttgtggcaagaccacccagattccacaattcgttttggaatctgagata
gaatctggtcacggggcttcttgtaatattatatgtacacaacctaggcgaatatctgct
atgtcagtgtctgaaagagttgcttcagaaagaggggaacagttgggtgaatctgttgga
tacaaggttcggttggagggtgtgaaagggagggacacccgccttctattttgcaccact
ggcatcttgttgagaagattacttgttgatagaagtttgaaaggtgtaagccatgttatt
gtggatgagatccacgagcgtggaatgaatgaagattttctgcttattgttcttaaggat
cttcttcctcgacgacctgaactacgcctcattttgatgagcgcaactctagatgcagat
ctttttgcatcatactttggtactgcccagattcttcacattccgggttttacataccca
gttagaactcattttctggaggacattcttgaaggcacgggttacaaattaaccccttac
aatcaaattgacgattatggtcaagaaaagatgtggaagatgagcaaacaagcaccgaga
aaaaggaaaagtcaaattgcttctgttgttgaggatgcactcaaagctgctgacttgaaa
gattacagtaaccagactcgagaatctttagcatgttggaatcctgattgtattggtttc
aattttattgagtatcttttgtgttatatctgtgaaaacgaaaggcctggagctgttcta
gtttttatgactgggtgggatgacataaattcattgaaggataagctcctggcgcatcct
ctgttgggtgatcaaactcgagttttgttgctcgcatgccatggctctatggctagttct
gaacagaggttaatatttgatgagcctgaagatggagtgaggaaaatagtactagcaaca
aatattgcagagacaagtatcacaattaacgatgttgtttttgtactcgattgcggaaag
gcaaaagagacatcatatgatgcactgaataacacaccttgtttacttccatcttggata
tccaaagtttctgctcaacaaagaagaggcagagctggtcgtgttcaacctggagaatgc
taccaactctatcccagatgtgtatataatgcttttgtggagtatcaattacccgaaatt
ttgaggacacctttacagtctctttgtctccaaataaaaagtttaaaccttggaagcatt
tctgagttcttatccagggctttgcagtcaccagagttattagcggtgcaaaatgctatt
gaatatttgaaagttattggagccttggacgagaatgaaaatttgaccgttttaggacgg
tatctaacgatgcttcccgtggagccaaaacttggaaagatgctcttgttaggtgccata
ttgaattgcctggacccaatattgactgttgtttctggcctcagtgtccgagatcctttc
ttaacaccatttgacaagaaggatcttgcagaggctgcaaaatctcagttctcaagagat
tacagtgatcaccttgcccttatcagggcatacgagggatggaaaaacgctgaaagagaa
tatgctggttatgattactgctggaaaaactttctctcattacaatcgatgaaagcaatc
gattctcttaggatggagttctattctctgttgagagatactggtttggtcgactccaat
agcaccagctacagtgcatggagctatgatgaacatctcgttcgagctgtcatatgctac
ggtctatatccaggggtttgctccgtggtgcataatgagaagtcgttttcactaaaaacc
atggaggatggccaggtgcttttatattcgaactcagtcaattcccgggaagctaaaatt
ccttatccatggcttgttttcaacgaaaagataaaagtgaactctgtattcctccgggat
tcaacagctgtgaatgattcaatgcttctcttattcggtggaagcatatctagcggggat
attgatggacacttgaaaatgttgggaggatacctcgaattttttatgaaacctgcggtg
gccgagatgtatcaatgtgtaaggagagagcttgatgatctaattcaaagcaaactactg
aacccgagaatggccataaacacccatcacgagctcttatcggctgtacggttgctgatt
tctgaggtcaactgcgaaggcaaattcgtatttggtcaccaggtcctcaaatctactaag
tcatgcgttaccaccagcacacagccggttgcaccttcaagaaccgaaagtggacccggg
ggtgataactctaaaagtcagctccaaacgttactcacccgagcaggatacaataccccc
acatacaaaactaagcaactaagtaactgtcagttcctagcaaccgtagagttcaatgga
atgcaaatagtgggccatccttgtaccaacaaaaagagcgccgagaaagacgcagcagct
gaagctctccagtggctaatgggcgaaactcgaaagggcaacgagtacatcaatcacatg
tcaatgatgttaaagaaaagcaaaaaagatcattactag
DBGET
integrated database retrieval system
