Cannabis sativa (hemp): 115713019
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Entry
115713019 CDS
T08987
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115713019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115713019
03041 Spliceosome [BR:
csav03041
]
115713019
03009 Ribosome biogenesis [BR:
csav03009
]
115713019
03016 Transfer RNA biogenesis [BR:
csav03016
]
115713019
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115713019
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115713019
Spliceosome [BR:
csav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115713019
Complex C
U4/U6.U5 tri-SnRNP related factors
115713019
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
Pre-60S particles
Helicases
115713019
Transfer RNA biogenesis [BR:
csav03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115713019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
Zot
ATPase_2
HHH_8
nSTAND3
Motif
Other DBs
NCBI-GeneID:
115713019
NCBI-ProteinID:
XP_030497347
LinkDB
All DBs
Position
4:52765910..52775137
Genome browser
AA seq
992 aa
AA seq
DB search
MGSIKRKLDENPPGETPQKQPRDNGLEEKLNDEPIACLHDVSYPEGYVPSARLSSTPITL
EPAKVFPFTLDPFQSEAIKCLEDGESVMVSAHTSAGKTVVALYAIAMSLKNKQRVIYTSP
IKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWVI
FDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKIHKQPCHIVYTD
YRPTPLQHYVFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPVSEGDKKKENGKWKKGLV
MGKIGEETDIFKMVKMIIQRQYDPVILFSFSKKECETLAMQMAKMDLNGDDEKVNIETIF
WSAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATET
FSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKLE
PSTAKMMLKGSADCLNSAFHLSYNMLLNQLRCEDGDPENLLRNSFYQFQADRALPDLEKQ
VKGLELERDSIIIEEEDSLKNYYNLLQQYNSLKKDIRDILLSPRYCLPFLQSGRLVSIQC
TRSNEIYPLFSTKNQVTWGVIINFQKVKNASEDDSSRKPEDSNYMVDILTRCAVNRDGVG
KKTIKIIPLKEPGEPVVVSVSISQIQSLSSLRVHIPNDLLPLEARENTVKKISEIISRFS
EKGIPLLDPEDEMNIKSSSYKKAARRIEALESLFDKHEVAKSPLIEQKLKAFHGKQELTA
QIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVLELKGKVASEISSAEELTLTE
LMLNGVFKDIKVEEMVSLLSCFVWQEKLQDATKPREGLDMLFVQLQDIARKVANVQLECK
VQIDVESFVTSFRPDIMEAVYAWAKGSKFYEIMSVTPVFEGSLIRAIRRLEEVLQQLIEA
AKSIGETELESKFEEAVSMIKRDIVFAASLYL
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgataaagaggaagttggatgaaaacccacctggcgaaacaccccagaaacag
cctagggataatggtttggaggaaaagcttaatgatgaacccattgcctgcttacatgat
gtatcctatccagagggttatgttccttctgcccgactttcttcgactccaatcactttg
gagcctgccaaagtattccctttcactcttgacccttttcagtctgaagccatcaagtgc
cttgaagatggtgagtccgtgatggtgtctgcccatacatctgctggaaaaactgttgtt
gctctatatgctattgctatgtctttgaaaaataaacaaagggtcatatatacctcacca
atcaaggccttgagcaatcaaaagtatagggagttcaaggaggagttctcagatgttgga
ttgatgactggggatgtaacgattgatccaaatgcttcatgtttggttatgacaacagaa
atttggcgtagtatgcaatacaaaggatcagaaataacacgtgaggtggcttgggtcatc
tttgatgaggtacattatatgcgtgatagagaaaggggtgttgtatgggaagagagcatt
gttatggccccgaagaattctcgatttgtattcctctctgcaacagtgcctaacgcaaag
gaatttgctgattgggttgctaagattcacaaacaaccatgtcacatcgtttatactgat
tataggccaacacctcttcagcattatgttttcccttctggaggcgatggtctatacttg
gtagtggatgaaaagggaaaattccgtgaagatagctttcagaagtcattaaatgcgctt
gttcctgttagtgagggtgacaaaaaaaaggagaatggaaaatggaagaaaggtttggtt
atgggcaagattggtgaagaaactgacatctttaagatggtgaaaatgatcatccagcgt
caatatgatcctgtcatactttttagttttagcaaaaaggaatgtgaaactcttgcaatg
cagatggcaaaaatggatctaaacggggatgatgagaaagtgaacatagaaaccatattt
tggagtgccatggatatgctgtctgacgatgataagaagttacctcaggtttcacatatg
ttacctctcttgaaacgtggaataggagtgcatcattctggcttgcttcctattttaaaa
gaagttattgagatactatttcaagaaggattgattaagtgtttgtttgccacagagaca
tttagcattggtttgaacatgcccgctaagactgttgtgtttaccaatgtccgtaaattt
gatggagataaattcagatggttatccagtggagaatatatacaaatgagtggtcgtgct
ggtcgtcgtggcattgataagcgtgggatatgcattcttatggtggatgagaagcttgag
ccatctactgctaagatgatgctgaaaggaagtgctgattgcttaaatagtgccttccat
ttaagctacaacatgcttttgaatcaattgcgctgtgaagatggtgacccagagaatttg
cttcgaaattctttttatcaatttcaagcagatcgtgcccttcctgatctcgagaaacaa
gtaaagggcttggagctagaaagggattcaattataatagaagaagaggatagtttgaag
aattattacaatttgttacagcaatacaatagtttgaagaaggatattcgtgatattttg
ctttctccaaggtactgcttaccgtttttgcaatctggtaggctggtttctatccagtgc
acaaggagtaatgaaatttacccattattctccactaagaatcaggtcacatggggagtg
ataatcaattttcaaaaggtgaagaatgcttctgaagatgattcaagtagaaaaccagaa
gattcaaactacatggtggatattcttacaagatgtgcggtgaatagagatggagtagga
aagaaaaccattaagatcattcccttgaaagagccaggagaacctgttgttgtttctgtt
tccatttctcagattcaaagtttaagtagtcttcgtgtgcacatacccaatgacctcttg
ccattagaagctcgagaaaacacagttaaaaagatttcagaaattatttcaagattcagt
gagaaagggattcccctcctagatccagaagatgaaatgaatattaaaagtagctcatac
aaaaaggcagctcgaaggatagaagcattagaaagcctgtttgacaagcatgaagtagca
aaatctcctctcattgaacaaaagctcaaagcatttcatgggaagcaagaactaacagca
caaataaagtcaattaaaaaaacaatgcgctcttctactgcattggcttttaaagatgaa
ctaaaggcaagaaaacgagttcttcggaggctagggtatgttacaagtgatgatgttttg
gagttgaaggggaaggttgcttctgaaattagtagtgcagaggagctgactcttacagag
ctgatgcttaatggtgtgtttaaagacattaaagtggaagagatggtatctcttctctct
tgttttgtgtggcaggaaaaacttcaagatgcaacgaaacctagggaaggacttgacatg
ctttttgtacaattacaagatatagctcgaaaagttgctaatgttcagcttgaatgcaag
gtccaaattgatgtggaaagctttgtgacctcatttcggcctgatataatggaggctgta
tatgcttgggctaaaggatctaaattttatgagatcatgtcagttactccagttttcgag
ggtagcttgatccgtgcgattaggagattggaggaggtccttcaacagcttatagaagca
gctaaatccattggagaaactgagctggagtcaaagtttgaggaagctgtttctatgatc
aagagggatatagtgtttgcagcttccttgtatttgtag
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