Cannabis sativa (hemp): 115713075
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Entry
115713075 CDS
T08987
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115713075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115713075
03041 Spliceosome [BR:
csav03041
]
115713075
03009 Ribosome biogenesis [BR:
csav03009
]
115713075
03016 Transfer RNA biogenesis [BR:
csav03016
]
115713075
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115713075
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115713075
Spliceosome [BR:
csav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115713075
Complex C
U4/U6.U5 tri-SnRNP related factors
115713075
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
Pre-60S particles
Helicases
115713075
Transfer RNA biogenesis [BR:
csav03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115713075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
115713075
NCBI-ProteinID:
XP_030497418
LinkDB
All DBs
Position
4:complement(58368436..58376362)
Genome browser
AA seq
984 aa
AA seq
DB search
MEESSPTLGKRKDPEEAEVTDSAKRRSLTRTCVHEVAVPSGYSSAKDESVHGTLANPVYN
GEMAKTYQFKLDPFQQVSVSCLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS
PLKALSNQKYRELSQEFQDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWV
IFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYT
DFRPTPLQHYVFPVGGSGLYLVVDENEQFREDNFVKLQATFSKQKDFGDSRGHRGSNGKP
SGRIAKGGPASGGSDIFKIVKMIMEKKLQPVIIFSFSRRECEQHAMSMSKLDFNTQEEKD
TVEQVFRNAILCLNEEDRELPAIELMLPLLQRGIAVHHSGLLPVIKELVEILFQEGLVKA
LFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDDRGICIIM
IDEQMEMNTLRDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEK
ALPDIGKRVSKLEEEVAVLDASGEAAVAEYHKIKLDIAQIEKMMMSEIMRPERILYFLQP
GRLVRIREGGTDWGWGVVVNVIKKPSAGLSARGGGYIVDTLLHCSPGSSENSSRPKPCPP
RPGEKGEMHVVPVQLPLISALSRLRISIPPDLRPLEARQSILLAVQELGTRFPQGLPKLN
PVADMGIEDPEIVELVKQIEELEKKLYSHPLHKSQDVDQIKSFQRKAEVNHEIQQLKTKM
RDSQLQKFRDELKNRSRVLKKLGHVDADGIVQLKGRAACLIDTGDELLVTELMFNGTFND
LDHHQIAALASCFIPGDKSNEQIQLRTELAGPLQQLQDSARRIAEIQHECKLDVNIEEYV
ESTVRPYLMDVIYCWSKGANFSDVIQMTDIFEGSIIRSARRLDEFLNQLRGAAQAVGEVN
LENKFGAASESLRRGIMFANSLYL
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatcttcgccaaccttagggaaacggaaagaccccgaagaggcagaagtcacc
gactccgcaaagcgccgaagcctcacacgaacctgcgttcatgaagttgctgttccgagt
ggctactcctcggccaaggacgagtctgtgcatggaaccctagccaatcctgtctacaat
ggagaaatggccaagacctaccaatttaaactcgacccgtttcagcaagtttctgtctct
tgcttggaacgtaacgagtcggtcttggtctcggctcacacttctgctggtaagaccgcg
gtggctgagtacgccattgccatggctttcagagataaacagagagttatctacacttcg
ccattgaaggccttgagtaatcaaaaatacagagagctcagccaagagtttcaagacgtt
ggtttaatgactggtgacgtcactctttcgccaaacgctagctgtttggttatgacaact
gagattctcaggggaatgctttatagaggttcagaggttctgaaagaagttgcgtgggtt
atatttgatgaaattcattatatgaaggatcgtgaaagaggggttgtttgggaagagagc
ataatattcttgccgccggccattaaaatggtttttctctcggcgacgatgtcaaatgcc
accgagttcgctgaatggatctgtaatttgcataaacagccttgtcatgtcgtttacaca
gattttcgaccgacgcctttgcagcattatgttttcccagttggtgggagtgggttatat
cttgtggttgatgagaatgaacaattcagagaagacaattttgtgaagctgcaagctaca
ttctcaaaacaaaaagattttggtgactccagaggtcacagaggctctaatggcaagcca
agtgggagaatagcaaagggtggacctgcttctgggggttctgacattttcaaaatcgtc
aagatgattatggaaaaaaagttgcagccagttattattttcagcttcagtaggagagag
tgtgaacaacatgccatgtcaatgtccaagcttgatttcaacacacaagaggaaaaagat
acagtagagcaagtttttcgtaatgccattctctgcttgaacgaagaagacagagaatta
ccggcaatagagttaatgttaccattacttcaacgaggtattgctgttcatcattctggt
cttcttccagttattaaggagttggtagagattcttttccaagaaggccttgtaaaggca
ctttttgctacagagacgtttgctatgggtttgaatatgccagcaaaaacagttgtgttt
actgcagttaagaagtgggatggtgatagccatcgtttcattgggtcaggtgagtatatt
cagatgagtggacgggctgggcgtcgtggcaaagatgaccgcggcatttgtataataatg
atagatgagcagatggagatgaatacgctaagggacatggttttgggtaaaccagctcct
ttagtgagtaccttcagattgagctactactccattttaaatttgatgagccgtgcagaa
ggccagttcaccgctgagcatgtgataaagaattcattccaccaatttcagtatgagaag
gctttacctgatataggcaaaagagtttcaaagcttgaggaggaagttgcagtacttgat
gcatcaggagaggctgctgttgctgaatatcataagattaaacttgatatagcccaaatt
gagaaaatgatgatgtcagaaataatgaggcctgaaagaattctgtattttcttcaacct
ggtcgactggtcagaattagggaaggtggaacagactggggttggggtgtcgtagttaac
gttattaagaagccctcagcaggattaagtgcacgtgggggcggttatatagtggatacc
ttgctacactgttcacctggttcaagtgaaaatagttcacgacccaaaccatgtccacct
cgtccaggagagaagggtgaaatgcatgtggttccagttcagctacccttgatttctgct
ctcagcagactaaggatatcgattcctccagatctgcgaccattggaagcaaggcaaagc
attctgctcgcagtacaggagctgggaactcgttttccccaaggtcttcctaagttgaat
cctgtagcggacatgggtattgaagatcctgagattgtcgagttggtcaaacaaattgag
gagcttgaaaaaaagctatattcacacccgcttcataagtctcaagatgtagatcaaatt
aaatcatttcagaggaaagcagaggtgaatcatgaaattcaacaactgaagacgaaaatg
cgtgattctcagcttcaaaaatttcgagatgagcttaagaaccgatcacgagtcctgaaa
aaacttggtcatgttgatgccgatggtattgttcagttaaaggggcgggcagcctgcttg
atcgatacaggagatgaactacttgttactgaattgatgttcaacggtacatttaatgat
ctcgatcatcaccaaattgctgctcttgcaagttgttttattccaggagataaatcaaat
gagcagatacagttgaggacagaacttgcagggccattgcaacaactccaagacagtgcg
agaaggatagcagagatacaacatgaatgcaaattagacgtaaacattgaagagtacgtg
gaatcaactgttaggccatacttgatggatgtaatatattgctggtcaaagggtgcaaat
ttttcagatgtcatacagatgactgatatctttgagggcagtatcattcgaagtgccaga
aggcttgatgagtttttgaaccagttacggggggcagctcaagctgtgggagaagttaat
ttagagaacaaattcggtgcagctagtgagagccttcgccggggtataatgtttgcaaat
tccctctatctttaa
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