Cannabis sativa (hemp): 115714232
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Entry
115714232 CDS
T08987
Name
(RefSeq) uncharacterized protein LOC115714232
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
csav03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115714232
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115714232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115714232
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
115714232
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
115714232
NCBI-ProteinID:
XP_030498709
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All DBs
Position
4:6926643..6930874
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AA seq
635 aa
AA seq
DB search
MSEEQMDFEDEEYGGLQKLQYQGNSGAISALADEEPMGEDDEYDDLYNDVNIGDGFMQLH
QSEAPLPPGGVNNGGLQAQKTNFLLPRDETGVSREPNIPGVSTDGKYPSTSSQIPGQKEG
LAVDNKSKVGFMLYPNGAASVSEKGRIMGSNGSLIQHGAGVDSSVIPVKVANEHVLSLNS
GNTANQTNVDLSVKHPAVNENLIRPPMENGSTMLFVGELNWWTTDAELENVLSQYGRVKE
IKFFDERASGKSKGYCQVEFHDSSAATACKEGMHGQVFNGRACVVAFATSQTLQQMGAAY
TSKNQVQNQSQLPQGQGRRPVSDGVGRGGNQNHQSGDGGRNFGRGGWGRGGQGILNRGGG
GVMRGRGGGAMGAKNMVGLGSNAGGVGGYGQGLGGHAFGGPAGGMMNPQAMMGFGFDQSC
MSRGGGYGGFPGHAYPGMLSSFPGVNTMGLGAVAPHVNPAFFGRGMTNNGMGMMGSPFMD
GHHAGMWNETSMGGWGGDEQVRRSKEASYGGGGGGDDGASEYGYGEANHEKGVRSSVASR
ERERGSDRERRHHEERDQDWDRPEKEQREHGYREEKDGYNRDHRRREHDLDNDDDWDKGR
SSSRPRSRSRVMPEDHQRSRSRDVDYGKRRRLPSE
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagagcaaatggatttcgaagacgaggagtatggaggacttcaaaagctccag
tatcagggtaatagtggagctatatctgctcttgcagatgaagaaccaatgggagaagat
gatgaatatgatgatctctataatgatgttaacattggagatggtttcatgcagttgcac
cagtctgaggcaccacttcctcctggcggtgtcaacaatggagggctccaagctcagaag
actaattttctattaccaagagacgaaactggggtatctcgtgaaccgaatattcctggt
gtttcaacagatggaaaatatcctagtacaagttctcaaattcctggccaaaaggaggga
cttgcagttgataataaatcaaaagttggtttcatgttgtacccgaatggagctgcttca
gtctcagaaaagggaagaattatggggtctaatggatctttgatacaacatggtgcagga
gttgattcatctgttattcctgtaaaagttgcaaatgagcatgtattgtcactgaattct
ggaaataccgctaatcaaaccaatgtggatttaagcgttaaacaccctgcggttaatgaa
aatctgataaggccaccaatggagaatggttcaactatgctgtttgttggggaactaaat
tggtggacaactgatgctgaacttgaaaatgttttatctcaatatggaagagtaaaggaa
attaagttttttgatgaaagagccagtggcaaatcaaaaggatattgtcaagttgagttt
catgattcatcagcagctactgcatgcaaggaaggaatgcatggtcaagttttcaatgga
agagcttgtgttgtggcatttgctacttcacaaacacttcaacagatgggagctgcttat
acaagcaagaatcaagtccagaatcagtctcaacttccccaggggcagggaagaaggcct
gtcagtgatggtgttggaagaggtggcaatcagaaccatcaaagtggagatggagggagg
aatttcggaaggggtggatggggacgaggtgggcaaggaatactcaacagaggaggtggt
ggggtaatgaggggaaggggaggaggggctatgggtgctaagaacatggttggacttggg
agcaatgctggtggagtaggtggatatgggcagggtcttggaggacatgctttcgggggt
cctgctggtggaatgatgaatccacaggccatgatgggttttggatttgatcagtcatgt
atgagtagaggaggtggttatgggggatttccaggacatgcttaccctggaatgctttct
tcatttccaggagttaacacaatgggactaggtgcagtggctccacatgtaaacccagcc
ttctttggcaggggtatgacaaataatggaatgggtatgatgggttctcctttcatggat
gggcatcatgcagggatgtggaatgagactagcatgggtggatggggaggagacgaacaa
gttcgaaggagcaaggaagcaagctatggtggtggtggtggtggtgatgatggtgcttct
gagtatgggtatggagaagcaaaccatgaaaaaggagtaagatcaagtgttgcttctagg
gaaagggagcggggatctgatcgtgagcggaggcatcatgaagaaagagaccaggactgg
gacagacctgaaaaggagcagcgggagcatggatacagagaagagaaagatgggtacaac
cgagatcatcgtcgaagagaacatgacttggataatgacgatgactgggacaaagggcgg
tcttcatctagacctcgtagtaggtcaagagtaatgccagaagatcatcaacggtctcgc
tcaagagatgttgattatggaaagaggagacgtttgccatcagagtaa
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