Cannabis sativa (hemp): 115714389
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Entry
115714389 CDS
T08987
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115714389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115714389
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115714389
Spliceosome [BR:
csav03041
]
Complex C
Other components
Step II factors
115714389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
ABC_tran
cobW
AAA_30
nSTAND3
SLFN-g3_helicase
AAA_16
NPHP3_N
ATPase_2
AAA_23
Helicase_RecD
AAA_29
NB-ARC
AAA_14
FtsK_SpoIIIE
T2SSE
Sigma54_activat
Flavi_DEAD
nSTAND1
DAP3
MMR_HSR1
AAA_33
NACHT
Motif
Other DBs
NCBI-GeneID:
115714389
NCBI-ProteinID:
XP_030498934
LinkDB
All DBs
Position
4:complement(8519647..8524731)
Genome browser
AA seq
702 aa
AA seq
DB search
MANLPIVQFEEKIIETVEQNPVVVIIGETGSGKSTQLSQILHKHGYSKSGAIGVTQPRRV
AAVSVSRRVAQELGVRLGEEVGYAIRFEDRTCDRTFIKYLTDGVLLRESLANPELNQYSV
IILDEAHERSLNTDILLGLMKRLIKRRTSNLKVLITSATLDGEKVSNFFSNCPVLNVPGK
LYPVEILYSNERPKSYLESCLKTALDLHVREPEGDILVFMTGQDDIDKLVSKLEDKIRSL
EEGSCMDVIILPLHGSLPPEMQVRVFSPPPANCRRIIVSTNIAETSLTVDGVVYVIDSGY
VKQRQYNSSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSAVYNDEFLDVTIPE
IQRSSLAGTVLYLKSLDLRDIDILKFDFLDPPSSESLEDALKQLYLIDAIDENGLITSIG
RTMAELPLEPSLSRTLIEANEYGCLSQALTVASMLSAETMLLPGRSKNTEKKRKQEHLDL
PDGSGWGDHIQLLQIYECWHQTDYDIDWLKDHGLQVRGMKFVKDVRRQLGQIMQKIAKGP
LDVQTSRRRRESEQDYYYLRKALCIGYANQLAERMVYHNGYRTLGFKPQVVQVHPSSVLE
PDDEGKLPDYIIFHELIATSRPYLRTVCSVDIKWVMPIRNKFSNLNINKLSGGSGHIDED
TNGKLSDSPKKEVVTGTAEVQDDRDSIIQAARERFLARKGKK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccttccgattgtccaattcgaagagaagatcatagaaacggtggaacagaat
ccggtggttgtaataataggagagaccggttcaggtaaaagcacacagctctctcagata
ctccacaaacatggatacagtaaatctggagctatcggcgtcacccaacctcgacgggtt
gccgcagtctcagtttccagacgagttgctcaggagcttggtgttcgtctaggagaggag
gtcggatacgctatcagatttgaagatcgaacctgtgatagaaccttcattaaataccta
actgatggtgttcttcttcgcgaaagtttggctaatcctgagcttaatcagtactcagta
ataattcttgatgaagctcacgagaggagtctaaatactgacatattgttgggattgatg
aagcgtctgattaagaggcgtacatcaaatttaaaagttctaataacttctgcaactctt
gatggtgaaaaagtatcaaactttttttcaaattgcccagtactgaatgttcctggaaag
ctataccctgttgaaatattgtacagcaatgagcgtcctaaaagctatcttgagtcatgt
ttgaaaacagcgcttgatttgcatgttcgggaaccagaaggtgatatcttagtatttatg
actgggcaggatgatatagacaagctggtatcaaaattagaagataaaataagaagccta
gaggaaggatcttgtatggatgtgataatccttccccttcatggttctttgccacctgaa
atgcaggtacgtgtatttagtcctccacctgcaaactgtaggcgaattattgtttccaca
aatattgcggagacttctttgactgtggatggtgttgtgtatgttattgactctggttat
gtgaagcaacggcaatacaactcatccactggcatgtattcccttgatgttgtccaaatt
agcaaagtacaagctaatcaacgtgcaggtcgagctggaagaacacgtcctgggaagtgc
tatcgattgtatccttctgctgtttacaatgatgaattcttggatgtaacaattcctgaa
atacagcgatcttctcttgctggaactgtcctttatttgaaatcattggaccttcgagat
attgatattttgaaatttgattttcttgatcctccttcctccgagtctttagaagatgct
ttaaagcaattatatctcatagatgccattgatgaaaatgggttgatcacgtcaattgga
agaacaatggcagagcttcctctagaaccttcactttcaagaactttgattgaggcaaac
gaatatggttgcttatcccaagcattgacagttgcttctatgttatctgcagaaaccatg
ttgcttcctggtagaagcaagaatactgagaagaaaaggaaacaggagcatttggatctt
cctgatggatctggctggggtgatcacatccagttgctgcaaatctatgagtgctggcat
caaactgactacgatattgattggttaaaggatcacggcttgcaggtgagagggatgaag
ttcgtcaaggatgtaaggaggcagttgggtcagattatgcagaaaattgcgaagggtcca
ttagatgtacagacaagccgaagacggagagaaagtgaacaggattattactatttgcga
aaggcgttgtgtataggttacgcaaatcagcttgctgagagaatggtgtatcataatgga
tacagaacattaggttttaaacctcaagtagtacaggtgcatccttcttcggtgttggaa
ccagacgatgaaggtaaactaccagactacattatatttcacgagctcattgcaacctca
cgcccatatttgcggacagtatgctcagttgatataaaatgggtgatgcctatcagaaac
aagttcagtaatcttaatatcaacaaattgagtggtggaagtggccatattgacgaggat
acaaatgggaagctctcagactcgcctaaaaaagaggtagtcaccggcactgctgaggtc
caagatgatcgtgatagtataatacaggcagctagggaacgatttctggcccgtaaagga
aagaaatga
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