Cannabis sativa (hemp): 115715295
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Entry
115715295 CDS
T08987
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115715295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115715295
03036 Chromosome and associated proteins [BR:
csav03036
]
115715295
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115715295
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115715295
PBAF complex
115715295
GBAF(ncBAF) complex
115715295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
MEF2_binding
Motif
Other DBs
NCBI-GeneID:
115715295
NCBI-ProteinID:
XP_030500006
LinkDB
All DBs
Position
4:28946677..28955910
Genome browser
AA seq
1000 aa
AA seq
DB search
MEEKRRDTGTLMSPAGEFSPPAEPTSSRRRGGAQKRKANNLGSSGSSSTSSKRITREKAS
LVHPPIHNGPLTRARQGPSNLSSASGAGVVAASPTGAKPAEHAKHPGGLVGETIVSVAEE
LRKQSELEALEAGLEAKFVATRSRSNCAHVVPSHCGWFSWKNVHPIEERTLPSFFNGKSE
SRTPDVYLEIRNGIMKKFHANPNIQIELKDLSELEVGELDARQEVMEFLDHWGLINFHPF
PPTGPATGGADDNVASEKGSLADKLYHFETLQSSKPVIPKNNISAPAVSSRLFPESSIAE
ELIRPEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFDSGMSSSDFILMEP
GEMQGLSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDSFFD
SCDDIEAVDPASSDKLNPKDALETNDSETAINVNQSTSSPMETSKEEMTEVQASQDTSKH
EDTDKGKVDQDTSKLDDGSESKGGKDAEENCAMKALKEAFEAVGYPLIPERPFSFAEVGN
PAMALAAFLAHLVGPDVATASSHNSLKSLSGNSPGIELASRHCFLLEDPPNDIKEPAGLP
SVVAEATNESFVNEKIEADLPKEDIPTDHCDKKSQDSVLEAKTLDVPNVETSEIYHSAKE
QDIKAGSDEASGSVSTANKSSTPAIVKDQPLSTDDLQSEAEIPPSFVKESEAKTEEPPEP
RKTSKEVEMSETTPEKNELQETVPSDVLKEPTNSVDAQVDEPNDSLHSKNNKDQHVTATS
VGKPSSEEPRDIDMVPHSGNSEKNEPSQPAEPNVTGEKVVDLTKDRDKKNGMGIKEDTKI
DKIKCAAVSAISAAAVKAKLLADEEEDQIRQLSMLLIEKQLLKLETKLGFFNEMENVLMR
VREQLDRSRQRLYHERAQIIAARLGLPASSSRGASSSLPANRVNINVTNSVQRPPFSMVS
QRPPLSRPMGTVAPTPSIPLSTTTAGSSIGPPSQEKLSSV
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaacgccgggacaccggaaccctaatgtctcccgccggtgaattttctccg
cctgcggagcccacctcttcgcggcgccggggcggagctcagaagagaaaagctaacaac
ctcggctcgtccggctcttcatccacgtcgtcgaagcgcatcactcgcgagaaagcttct
ctcgttcaccctccgatccacaacggcccactaaccagggctcgtcagggacccagcaat
ctctcctcggcttccggggcaggtgttgtagcggcgtcacctactggggcgaagccagct
gaacacgccaagcatcctggtggtttagttggggagacaattgtttctgtagctgaggaa
ttaagaaaacagagcgaattggaagctttggaggctggacttgaggccaagttcgtggcc
actagatctcgtagtaactgcgcccatgtggttcccagtcattgcggatggttttcatgg
aaaaatgtccaccccattgaggaacgcacattgccatctttctttaatgggaagtccgag
tcgcgtactcctgatgtgtacttggaaattcgtaacgggattatgaagaaatttcatgca
aatccaaacatacaaattgagttgaaagacttgtcagaacttgaggttggagaattggat
gctagacaagaggtaatggagtttttggaccattggggtttaattaatttccacccattc
ccaccaactggtcctgccactggtggtgctgatgataatgttgcttcagaaaagggttca
ttggctgataagttgtatcactttgaaaccctgcaatcttctaagcctgttattcccaaa
aataatatatcagctccagctgtgtcatcaagactgtttcccgaatcatcaattgctgaa
gagttaataaggcctgagggtccagctgtcgagtaccattgcaattcttgttcagctgat
tgctcacgcaagcgctaccattgccagaagcaggcagattttgatctatgtactgattgc
tttaacaatgggaagtttgactctggtatgtcatcttcggattttattctcatggagcct
ggtgagatgcagggtctcagtgggggaaagtggaccgatcaggagactctcctcctcctt
gaggcattagaactttataaagaaaactggaatgagattgctgaacatgtcgctacgaaa
acaaaagctcaatgcatattacattttgttcaaatgccaattgaggatagcttttttgat
agttgtgatgatattgaagctgtggatccagcttctagtgataaattaaaccccaaggat
gctcttgaaacaaatgatagtgagactgctattaatgtaaatcagtccacttcttcccca
atggaaacttcaaaagaagaaatgactgaagttcaagctagtcaggacacttcaaaacat
gaagatacagacaaaggaaaagttgaccaggacacttcaaaactggatgatggcagtgaa
tctaaaggtggcaaggatgcagaagaaaattgtgcaatgaaggctctcaaggaagcattt
gaagctgttggttatcctctgatacctgaacgaccattttcatttgctgaagtggggaat
cctgccatggcattggcagctttcctggcacatttggttggacctgatgttgctactgct
tcatcacacaattctttaaaatccctatctggaaactccccaggcattgagctggcttca
agacactgctttcttttggaggatccaccaaatgacattaaggaaccagctgggttgcct
agtgtggttgctgaagctactaatgagagctttgtgaatgaaaaaatcgaagcagacctt
ccgaaagaagatataccaactgatcattgtgacaagaaaagtcaagattctgttcttgaa
gcgaaaacattggatgtcccaaatgttgaaacctccgagatatatcacagtgcgaaagaa
caagatattaaagctggtagtgatgaagcttctggtagtgtaagtacagcaaacaaatca
agcactcctgcgatagtaaaggatcaaccactatctacggatgatttacaatctgaggca
gagattccgccaagttttgtgaaggagtcagaagcgaaaacagaagagcctcctgaaccc
agaaagacgtcaaaggaagtagaaatgtctgaaactacccctgaaaagaatgagctgcaa
gaaacagttccatcagatgtattaaaggaacctaccaattcagtagatgcgcaagtagat
gaacctaatgattctttgcattcaaaaaataataaggatcagcatgtaactgccacttca
gttggaaaaccttcttctgaggaaccaagagacatagatatggtgcctcattcggggaac
tcagaaaagaatgaaccttcacagccagctgaaccaaatgtaacaggtgaaaaagttgtg
gatcttactaaagatcgtgacaaaaagaatggtatgggtataaaagaagacaccaagatt
gataaaataaagtgtgcagctgtctctgctatctctgcagcagcagtgaaggccaaactt
ctagcagatgaggaagaagaccaaatccgacaactttccatgttactgatagagaagcag
ttgctaaaactggaaaccaagttagggttttttaatgagatggaaaatgtactaatgagg
gttagggagcaattagatagatcaaggcaacgtctttaccatgaacgggcgcaaataatt
gcagccagacttggcttacccgcttcctcatctcgaggggcgtcttcatctttgcctgcg
aatagggtgaacatcaacgttactaactcagttcaaaggcctccatttagcatggtttct
cagaggcctcccttgtcaagacccatggggacagtggcgcctaccccttcaataccattg
tccacaacaacagcaggtagctcaattggacctccgagccaggaaaagctttcctctgtt
tga
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