Cannabis sativa (hemp): 115716309
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Entry
115716309 CDS
T08987
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03013
Nucleocytoplasmic transport
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115716309
03015 mRNA surveillance pathway
115716309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115716309
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115716309
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115716309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
IFT52_central
DUF5886
Cas9_a
Cupin_NOL9
Motif
Other DBs
NCBI-GeneID:
115716309
NCBI-ProteinID:
XP_030500928
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All DBs
Position
5:73730010..73734427
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AA seq
500 aa
AA seq
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MSDADSNAATPATTTTATTTTTIAQPPAVTKTPVKETKRWADMEDEESKNTLSASSSEVN
IDNLKIDEEKKINSFLDEAEDSNIKAVISGETPYTSAKTFEELELRAELIKGLYVEMRFQ
KPSKIQAISLPMILTPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPQLKAPQAICICPTRE
LAIQNLEVLLKMGKYSGISSECAIPMDSTNYIPINKRPPVSAQIVIGTPGTIKKWMSAKK
LGVSNVKILVFDEADHMLAEDGFKDDSLRIKKDIDRSSPHCQVLLFSATFNETVKNFVSK
IVKDYNQLFVKKEDLSLASVKQYKVYCPDEMTKIQIIKERIFDLGENIGQRIIFVRTRNS
ASMLHKQLVDDGYAVTTIQGANTPEVRDKIIKEFKDGLTQVLITTDLLARGFDQQQVNLV
INYDLPIKYDTQEPDYEVYLHRIGRAGRFGRKGAVFNLICGDRDEATMRKIELYFQSEVT
VVNNSEEDFEKALKQSGLLE
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgctgattctaatgctgccactcccgccaccaccactactgccaccactacc
accaccatcgcccaaccaccagcggttaccaaaaccccagtgaaggaaactaaacgctgg
gccgatatggaggacgaagagtccaaaaacaccttgtctgcttcatcatcagaagtaaac
attgataatttgaaaattgatgaggaaaagaagataaacagcttcttagatgaagctgag
gattccaatatcaaagctgttatatctggggaaacgccttacacttcggctaagaccttt
gaggaattagaacttagagcggagttgattaagggcttgtatgtggagatgaggtttcag
aagcccagtaagatccaagctattagtttgccaatgatcttgacgcctccgcataaggat
ttgattgctcaagcacataatgggtctggtaagaccacttgtttcgtgcttggaatgttg
agccgtgttgatccccagctcaaggctcctcaagccatttgcatctgtcccaccagagag
ctggctattcagaatttggaggttcttcttaaaatggggaagtactcaggaataagttcg
gagtgtgccattccgatggacagcacaaactatatacccattaacaaacgaccacctgtg
tcggctcaaatagtaattgggacgcctggtaccattaagaaatggatgtctgcgaagaaa
ttgggggttagcaatgtgaaaattcttgtttttgacgaggctgatcacatgcttgcagag
gatggctttaaagatgattctttgagaataaagaaggatattgacagaagtagtcctcac
tgccaggtgcttctgttttctgcaacttttaatgaaacagtcaagaattttgtttcgaag
atagttaaagattacaaccagctctttgtaaagaaagaagacttatctctggcgtccgtc
aaacagtacaaggtctactgtcctgatgagatgaccaagattcaaataattaaagagaga
atatttgatctgggtgaaaacattggacaaaggattatttttgtccgaacacgaaacagc
gcaagcatgctgcataaacagcttgtggatgatgggtatgctgtgacgaccatccaaggt
gctaacacaccagaagtgagagacaaaattattaaagagtttaaagatggtttaactcag
gttcttattacaactgaccttcttgcccgaggtttcgaccaacaacaggttaatttggtg
atcaactatgatttgccgattaagtatgatacccaagaacctgattatgaggtttaccta
caccgaattggaagggctggtcggtttgggaggaagggtgctgtatttaatttaatctgt
ggtgatagagatgaagccacaatgagaaagattgagctctactttcagagtgaagtgact
gtggtgaataatagtgaggaagactttgaaaaagcattgaagcaatcgggtctacttgaa
tga
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