KEGG   Cannabis sativa (hemp): 115716650
Entry
115716650         CDS       T08987                                 
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    115716650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:csav03009]
    115716650
Ribosome biogenesis [BR:csav03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    115716650
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Utp13 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_Nup120_160 ANAPC4_WD40 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_NWD2_C WD_LRWD1 Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_WDR19_1st WDR54 Beta-prop_Vps41 Beta-prop_WDR75_2nd Ge1_WD40 VID27 WD40_like Cytochrom_D1 Beta-prop_NOL10_N Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 115716650
NCBI-ProteinID: XP_030501357
UniProt: A0AB40E6S6
LinkDB
Position
5:3382125..3388738
AA seq 867 aa
MAMATLPLKKSYRCVPSLQQFYTGGPLVVSSDGSFIVCVCGDSIKIVESSNAAIRATIDG
DSETFTALALSPDDKLLFSSGHSRMIRVWDLSTLKCVRSWKGHDGPVMGMACHPSGGLLA
TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDSTKSLLFSASDDTTVKVWDLLTK
KCVATLGGHNSTVTSIAISEDGGMLLSAGRDKVVMLWDLLDYSCKKTVLTYEAVEAVCVI
HSSTPFVPCLEQSGKKSGSQGIYFVTVGERGIVRIWNSERAACLFEQQSSDVTVSSDEDG
SKRGFATAVMLPLDQGLLCVTVDQQLLVYSPVKQPEGIFDIVMSKRLVGYNEEIVDMKFL
GNEEKYLAVASNTEQVRVYDLASMSCHYVLAGHTETILSLDTCVSSSGQTLIVTGSKDKS
VRLWDSETGRCLGDCVGHMGAVGAVAFSKKGKSFFVSGSSDRTLKVWNFDGLSDDVEQPV
DLQAKAVVAAHDKDINSLAIAPNDSLVCSGSQDRTARLWKLPDLVPGAVLKGHKRGIWSV
EFSPVDQCVITSSGDKTIKLWDITDGSCLKTFEGHTSSVLRASFITRGTQFVSSGADGLV
KLWTVKTNECIATYDHHEDKVWALAVGKKTEMLATGGGDAVVNLWHDSTASDKEEAFQRE
EEGVLKGQELQNAIVDADYTKAIQIAFELRRPHKLFELFAELCRKREAENQIQKALQALN
KEEFRLLLEYVREWNTKPKLCHVAQFVLFRVFNNVPPTEIIEIKGISELLEGLLPYSQRH
FSRVDRLVRSTYLLDYTLTGMSVIEPKTDARESKAHSENADKEQQQADEEGLNPKASLKK
RKSDKHKERKKQKKVKDVAYTRVAAVS
NT seq 2604 nt   +upstreamnt  +downstreamnt
atggcaatggcgactctaccactcaagaagagctatcgctgtgtaccatctctacaacag
ttctacaccggtggacctttagtagtctcatccgacggctcattcatcgtctgtgtctgc
ggcgattccatcaaaatcgtcgaatcttccaacgccgctattcgcgcaaccatcgatgga
gactcagaaaccttcacggctttagctctttcccccgatgataagcttctattctcgtcc
ggacacagtcgtatgattagagtttgggacctttcaaccttgaaatgcgttcggtcatgg
aagggacatgatggtcctgtgatgggtatggcttgtcatccttcggggggtttgcttgcg
actgctggagctgataggaaagttcttgtttgggatgttgatggtggtttctgtactcat
tactttaagggtcataagggggttgtttcgagtattctttttcatcctgattcgaccaaa
tcacttctattttccgcaagtgatgatacaactgtaaaagtttgggatcttttgactaag
aagtgtgttgcaacacttgggggacataattcaactgttacttcaatagctatatctgaa
gatggtgggatgttgcttagtgctggaagagataaggttgtgatgttatgggatcttcta
gactacagttgcaaaaagacggtattgacatacgaagctgttgaagctgtgtgtgtcatt
cattcttcaactcctttcgtgccgtgtttggaacagagtggaaagaaaagtgggtcacaa
ggaatttattttgtaactgtcggtgagcgtgggattgtacgaatatggaattctgaaaga
gcagcctgtctgtttgaacaacagtcttcagatgttacggttagttcagatgaggatggc
agcaaaaggggtttcgctactgctgttatgcttcccttggatcaaggattgctttgtgtg
actgttgatcaacaacttcttgtgtattcccctgtgaaacaacctgaagggatctttgat
atagtcatgagcaaaagacttgtaggatacaatgaggaaattgttgatatgaagttctta
ggcaatgaagagaaatatcttgctgttgcttcaaataccgaacaggtacgagtgtacgac
cttgcatcaatgtcgtgtcactatgtattggcgggtcatactgaaactattttaagtttg
gacacatgtgtgtcgagttctggacaaacacttattgtaactggcagtaaggacaaaagt
gttagattgtgggactcggaaactggacgttgccttggcgactgtgtaggtcatatgggt
gctgttggagccgtcgccttttctaagaaagggaaatccttctttgttagcggtagcagt
gatcgtaccctcaaggtgtggaacttcgatggtctttcagatgatgtggaacaacctgtg
gatttgcaagccaaagctgttgtggcagcacacgataaggatatcaattctttggctatt
gcaccaaatgatagtcttgtttgtagtggttcccaggaccgcactgctcgtttatggaag
ctgccagatcttgtacctggagctgtacttaaagggcataaaagggggatttggtcagtt
gagttttctccagttgatcaatgtgtcataacatcatcaggagacaagacaataaagcta
tgggatataactgatggttcatgcttgaaaacattcgagggtcatacctcaagtgtgtta
agagcatcatttattactcgcgggactcaatttgtctcttctggtgccgatggtttagta
aagctatggacagtcaaaaccaatgaatgtattgctacatatgatcatcatgaggataag
gtttgggctttggcggtagggaagaagacagaaatgttagccacaggtggcggtgatgct
gttgtcaatctatggcacgattctactgcttctgataaagaggaagctttccagagagag
gaagaaggtgttctaaagggtcaagaacttcagaatgctatagtggatgctgattataca
aaagcaatacaaattgctttcgagctacgtaggcctcacaagcttttcgagctgtttgct
gaactttgcaggaagagagaagctgaaaaccagatacagaaagcccttcaggctcttaac
aaggaagaattccggttacttctggagtatgttcgagaatggaatactaaaccgaaactc
tgtcatgttgcacaatttgtgcttttcagagttttcaacaacgtgcccccaaccgagatt
attgagattaaaggtatttcggaactccttgaagggctcctaccatattctcagaggcat
tttagccgggtagacaggcttgtgagaagcacatatttgttagactacactcttacagga
atgtcagtcattgaaccgaaaactgatgcaagggaatcgaaagctcattcagaaaatgca
gacaaggaacaacaacaggcagatgaagaagggttgaacccgaaggcatccttgaagaag
cgaaaatcagacaagcataaagagaggaagaagcaaaagaaagttaaagacgtagcttac
actcgcgttgctgctgtatcataa

DBGET integrated database retrieval system