Cannabis sativa (hemp): 115716650
Help
Entry
115716650 CDS
T08987
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115716650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csav03009
]
115716650
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
115716650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Utp13
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_Nup120_160
ANAPC4_WD40
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WDR54
Beta-prop_Vps41
Beta-prop_WDR75_2nd
Ge1_WD40
VID27
WD40_like
Cytochrom_D1
Beta-prop_NOL10_N
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
115716650
NCBI-ProteinID:
XP_030501357
UniProt:
A0AB40E6S6
LinkDB
All DBs
Position
5:3382125..3388738
Genome browser
AA seq
867 aa
AA seq
DB search
MAMATLPLKKSYRCVPSLQQFYTGGPLVVSSDGSFIVCVCGDSIKIVESSNAAIRATIDG
DSETFTALALSPDDKLLFSSGHSRMIRVWDLSTLKCVRSWKGHDGPVMGMACHPSGGLLA
TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDSTKSLLFSASDDTTVKVWDLLTK
KCVATLGGHNSTVTSIAISEDGGMLLSAGRDKVVMLWDLLDYSCKKTVLTYEAVEAVCVI
HSSTPFVPCLEQSGKKSGSQGIYFVTVGERGIVRIWNSERAACLFEQQSSDVTVSSDEDG
SKRGFATAVMLPLDQGLLCVTVDQQLLVYSPVKQPEGIFDIVMSKRLVGYNEEIVDMKFL
GNEEKYLAVASNTEQVRVYDLASMSCHYVLAGHTETILSLDTCVSSSGQTLIVTGSKDKS
VRLWDSETGRCLGDCVGHMGAVGAVAFSKKGKSFFVSGSSDRTLKVWNFDGLSDDVEQPV
DLQAKAVVAAHDKDINSLAIAPNDSLVCSGSQDRTARLWKLPDLVPGAVLKGHKRGIWSV
EFSPVDQCVITSSGDKTIKLWDITDGSCLKTFEGHTSSVLRASFITRGTQFVSSGADGLV
KLWTVKTNECIATYDHHEDKVWALAVGKKTEMLATGGGDAVVNLWHDSTASDKEEAFQRE
EEGVLKGQELQNAIVDADYTKAIQIAFELRRPHKLFELFAELCRKREAENQIQKALQALN
KEEFRLLLEYVREWNTKPKLCHVAQFVLFRVFNNVPPTEIIEIKGISELLEGLLPYSQRH
FSRVDRLVRSTYLLDYTLTGMSVIEPKTDARESKAHSENADKEQQQADEEGLNPKASLKK
RKSDKHKERKKQKKVKDVAYTRVAAVS
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggcgactctaccactcaagaagagctatcgctgtgtaccatctctacaacag
ttctacaccggtggacctttagtagtctcatccgacggctcattcatcgtctgtgtctgc
ggcgattccatcaaaatcgtcgaatcttccaacgccgctattcgcgcaaccatcgatgga
gactcagaaaccttcacggctttagctctttcccccgatgataagcttctattctcgtcc
ggacacagtcgtatgattagagtttgggacctttcaaccttgaaatgcgttcggtcatgg
aagggacatgatggtcctgtgatgggtatggcttgtcatccttcggggggtttgcttgcg
actgctggagctgataggaaagttcttgtttgggatgttgatggtggtttctgtactcat
tactttaagggtcataagggggttgtttcgagtattctttttcatcctgattcgaccaaa
tcacttctattttccgcaagtgatgatacaactgtaaaagtttgggatcttttgactaag
aagtgtgttgcaacacttgggggacataattcaactgttacttcaatagctatatctgaa
gatggtgggatgttgcttagtgctggaagagataaggttgtgatgttatgggatcttcta
gactacagttgcaaaaagacggtattgacatacgaagctgttgaagctgtgtgtgtcatt
cattcttcaactcctttcgtgccgtgtttggaacagagtggaaagaaaagtgggtcacaa
ggaatttattttgtaactgtcggtgagcgtgggattgtacgaatatggaattctgaaaga
gcagcctgtctgtttgaacaacagtcttcagatgttacggttagttcagatgaggatggc
agcaaaaggggtttcgctactgctgttatgcttcccttggatcaaggattgctttgtgtg
actgttgatcaacaacttcttgtgtattcccctgtgaaacaacctgaagggatctttgat
atagtcatgagcaaaagacttgtaggatacaatgaggaaattgttgatatgaagttctta
ggcaatgaagagaaatatcttgctgttgcttcaaataccgaacaggtacgagtgtacgac
cttgcatcaatgtcgtgtcactatgtattggcgggtcatactgaaactattttaagtttg
gacacatgtgtgtcgagttctggacaaacacttattgtaactggcagtaaggacaaaagt
gttagattgtgggactcggaaactggacgttgccttggcgactgtgtaggtcatatgggt
gctgttggagccgtcgccttttctaagaaagggaaatccttctttgttagcggtagcagt
gatcgtaccctcaaggtgtggaacttcgatggtctttcagatgatgtggaacaacctgtg
gatttgcaagccaaagctgttgtggcagcacacgataaggatatcaattctttggctatt
gcaccaaatgatagtcttgtttgtagtggttcccaggaccgcactgctcgtttatggaag
ctgccagatcttgtacctggagctgtacttaaagggcataaaagggggatttggtcagtt
gagttttctccagttgatcaatgtgtcataacatcatcaggagacaagacaataaagcta
tgggatataactgatggttcatgcttgaaaacattcgagggtcatacctcaagtgtgtta
agagcatcatttattactcgcgggactcaatttgtctcttctggtgccgatggtttagta
aagctatggacagtcaaaaccaatgaatgtattgctacatatgatcatcatgaggataag
gtttgggctttggcggtagggaagaagacagaaatgttagccacaggtggcggtgatgct
gttgtcaatctatggcacgattctactgcttctgataaagaggaagctttccagagagag
gaagaaggtgttctaaagggtcaagaacttcagaatgctatagtggatgctgattataca
aaagcaatacaaattgctttcgagctacgtaggcctcacaagcttttcgagctgtttgct
gaactttgcaggaagagagaagctgaaaaccagatacagaaagcccttcaggctcttaac
aaggaagaattccggttacttctggagtatgttcgagaatggaatactaaaccgaaactc
tgtcatgttgcacaatttgtgcttttcagagttttcaacaacgtgcccccaaccgagatt
attgagattaaaggtatttcggaactccttgaagggctcctaccatattctcagaggcat
tttagccgggtagacaggcttgtgagaagcacatatttgttagactacactcttacagga
atgtcagtcattgaaccgaaaactgatgcaagggaatcgaaagctcattcagaaaatgca
gacaaggaacaacaacaggcagatgaagaagggttgaacccgaaggcatccttgaagaag
cgaaaatcagacaagcataaagagaggaagaagcaaaagaaagttaaagacgtagcttac
actcgcgttgctgctgtatcataa
DBGET
integrated database retrieval system