Cannabis sativa (hemp): 115717036
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Entry
115717036 CDS
T08987
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X2
KO
K10570
DNA excision repair protein ERCC-8
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03420
Nucleotide excision repair
csav04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115717036
09124 Replication and repair
03420 Nucleotide excision repair
115717036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csav04121
]
115717036
03400 DNA repair and recombination proteins [BR:
csav03400
]
115717036
Ubiquitin system [BR:
csav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115717036
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
115717036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
ANAPC4_WD40
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_Nup120_160
Beta-prop_SPT8
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
115717036
NCBI-ProteinID:
XP_030501836
LinkDB
All DBs
Position
5:complement(8329536..8333614)
Genome browser
AA seq
449 aa
AA seq
DB search
MWREIGDREEGKTRPNWFANRIKWNRVEKLKLSNHKDIVSAHRGSINSLQVDLTEGRYLL
SGSSDASAAVYDIQRPTEFEGGGVIAKHKCLFVVDKSHENGHKYAVSSAIWYPVDTGLFI
TGSFDHHINVWDTNTTQVVNTFKMPGKVYKTAMSSLSTSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRP
PILERSAANKVSTSKSAIVPSSSVKSRAAQKKAANGYSMKLSPINKISAKGPLRQRLHPG
MLSTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGRNTLVNFETVRMQTSK
PIQLATSQNPSLVFVPCMTTVKAFDMWSGTTSLTFCGHYESVNCCWFSSQDQELFTGGND
RQILVWSPSRLLPDKMDDGPVEDKDNWSD
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtggagggagatcggagacagagaagagggcaaaactcgcccaaattggttcgcgaat
cgcattaagtggaaccgcgttgagaagctcaaattatccaatcacaaagatatcgtctca
gctcatagaggttctatcaattctcttcaggtcgatttgactgagggccgatacttgttg
tctggttcttctgatgcttcagctgccgtttacgatatccaacgtcctaccgagtttgaa
ggaggtggagttatagctaagcataagtgtttattcgtggttgacaagagccatgaaaat
ggtcataagtatgctgtttcctccgccatatggtatcctgtggacacaggtttgttcatc
actggttctttcgaccatcatattaacgtttgggatacaaacaccacgcaggtagtcaat
acttttaagatgcccggaaaggtttataagactgccatgtcttctttatcaacatcccac
atgttgattgctgctggaactgaagatgttcaagttcgtctctgtgatattgcttcaggg
gcatttgctcatacactttccggtcaccgtgatggtgtgatgacggtggaatggtctact
tcaagtgagtgggttttggttaccggggggtgcgatggtgcaatacgtttttgggacatc
agacgtgccggatgttttcttgttttagaccagtcccaatctcagctggggagacgccca
ccgattctggaacgatctgctgctaataaggtttctacatcaaagtctgccatagtccca
agttcgtcagtaaaaagccgagcagcacaaaagaaagccgccaatggttatagtatgaaa
ctgtcacctattaataaaatttctgcaaaaggaccattaaggcagagattacatccaggg
atgttgtcaactcaggatcgtgccactgctcattacggtgcggttactggattaaaagtt
actgaagatggcatgtatcttctgagtgcaggttctgattcaagattaaggctgtgggac
gttgaatctggtcgcaatacactagtgaacttcgaaactgtacggatgcaaaccagcaag
ccaatacagttagctacaagtcagaacccatcccttgtttttgttccatgcatgacaact
gtgaaggcatttgatatgtggtcaggcacgacatccctgacattttgtggtcactatgaa
tcagtaaactgttgctggttcagttctcaagatcaggagttgtttacaggtggcaatgat
agacaaattctcgtctggtcgccgtccagattgcttcctgataaaatggatgacggacct
gttgaggataaggataattggagtgactga
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