Cannabis sativa (hemp): 115717118
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Entry
115717118 CDS
T08987
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03013
Nucleocytoplasmic transport
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115717118
03015 mRNA surveillance pathway
115717118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115717118
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115717118
5.6.2.5 RNA 5'-3' helicase
115717118
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115717118
mRNA cycle factors
Common to processing body (P body) and stress granule
115717118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
115717118
NCBI-ProteinID:
XP_030501924
LinkDB
All DBs
Position
5:complement(71909984..71921668)
Genome browser
AA seq
1272 aa
AA seq
DB search
MDSQQSNLFDTSSQPDAGNDAYTFLEFNTQGEDFDYPEFRDSIRSPVAWPTPSDSLAEPT
DRVGGGAAGPGSDHQSDASPVSTAPGSATKARASSSSNNQVVDALATGMSGLNFEDTGDD
DNYDYAKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHK
EVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDL
SQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVD
DEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFV
FPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDLNH
GFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPG
LPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAV
DQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQG
ELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQSTEPE
CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMH
PSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYL
NRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVAS
VDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLW
NGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGVVPSDSFSSVSSS
NQNAERRSARGRGSYIPPSPPNGTHKPGLHPAGYPMPRVPLPPFPGGPASQPYAIPTRGA
VHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSHLPHQQGAQQSFGNIGSTFNFPALENPN
SQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMAGMSQDFLGDDFKSQGSHVPYNVADFS
TQASQSGYGVDYVTQGAQGGFPGNFLNQNSQAGYSRFGTGNDFMSQDYMPHGSQGLFTQA
AFNDPSQDDASQSHYGVANASQLQSQGLMNSLYSQPFTHYNTQPLNLQAPQQQQQPPQPS
QSSQNQKIHYNG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggattctcagcagagtaatctgttcgatacgtcttcgcagcccgacgcgggcaacgac
gcctacacattccttgagttcaacacgcaaggggaggacttcgattacccggagtttcgg
gactcgattcggtcccctgttgcttggcctacgccttccgattcgttggctgaaccaact
gatcgcgtcggtggtggagccgctggtcctgggtccgatcaccagtctgatgcctcgccg
gtttcgactgcgccgggtagtgcaactaaggcacgggcgagtagtagctcgaataatcag
gttgtggatgctttggcgaccgggatgagtgggcttaactttgaggatactggggatgat
gataattatgattatgccaagggggatttcacagagcatgcttgtagatattgtggggtg
tcgaacccggcttgcgttgtgaggtgtaatgtgccttcgtgtcgtaagtggttctgtaat
tcgcgggggaacacgtctgggtcgcatattgtgaatcatctggttcgagccaagcacaag
gaagtctgccttcataaagatagtccgcttggtgaaacaattcttgaatgttataattgt
ggttgtcgcaatgtgtttctacttggatttatatcagccaagacagagagtgtggttgtt
cttctttgtagagaaccttgcttaagtgttaatgcattgaaggatatgaattgggacttg
agccaatggtgtcccttgattgatgataggtgtttcttgcagtggcttgttaaggtgccg
tctgaacaagagcagctgagagcacgacaaatcagtgctcaacaaataaacaaggtagaa
gaactttggaaaacaaatccagatgcttcacttgaagatcttgagaaacctggtgtggat
gatgaacctcagcctgtagttttgaaatatgaagatgcttaccagtaccaaaatgtattt
gcaccacttattaagcttgaagctgactatgacaaaatgatgaaagaatctcaaagcaag
gataatgtcaccattcgatgggatattggtctaaataaaaagcgagttgcttattttgtt
tttccaaaggaggacaatgagttgcgtcttgtacctggagatgagttgcgattgcgttat
tctggagatgctgctcatccagcatggcaatcagttggacatgtgattaagttaactgca
caagaagaggttgcacttgaacttcgagctagtcagggagtacctgttgacctgaaccat
ggttttagtgttgacttcgtttggaagagtactagctttgataggatgcaaggagcaatg
aaaacttttgcagtggatgagactagtgtcagtgggtatatctaccatcacttgttaggc
catgaagtagaggttcagatggttcgcaatacgcttcctcgtcgttttggtgcacctggt
cttccagagctaaatgcatctcaagtttttgctgttaaaagtgttctacagaagcctata
agtcttattcaaggacctcctggtacgggaaaaactgtgacttcggcagcaattgtgtat
cacatggcaaaacaaggccaagggcaggtcttggtttgtgcccctagtaatgtggctgta
gaccaactagcagagaaaataagtgccacaggattaaaggttgttaggctttgtgctaag
tccagggaagctgtaagttctcctgtcgagcacttaaccctacactaccaggttcgccat
ttagacacatctgaaaagagtgaacttcacaagttacaacaattgaaagatgaacaaggt
gaattgtccagcagtgatgaaaaaaaatataaagctctgaagcgagcaacagagagagag
atttctcagagtgctgatgtcatatgttgtacttgtgttggagctggagatccccgatta
gcaaactttagattccgccaggtactcattgatgaatctactcagtcaacggaacctgaa
tgccttattcctttagttcttggtgcaaagcaggtggttcttgtcggtgatcactgtcag
cttggtccagttattatgtgcaaaaaagcagcacgtgctggcttagcgcagtctcttttt
gaacggcttgttctacttggtgtgaaaccaattaggttgcaggttcaatatcgcatgcat
ccttctctgtcagagtttccttctaacagcttttatgaaggcacactgcaaaatggagtg
actatcaatgaaaggcaatctactggcattgatttcccttggccagttcccaatcgtcct
atgttcttttatgtacagatggggcaagaggagataagtgccagtggtacatcttatctc
aacaggacagaggctgctaatgttgaaaagattgtgaccactttcttaagaagtggtgta
gttcctagccagataggggtcataacaccatacgagggacaaagggcgtatattgtgaac
tatatgtcaaggaatggtgctctcagacaacaactttacaaggaaattgaggttgcaagt
gtcgattcatttcagggtagggagaaagattacatcatcctgtcatgtgttagaagtaat
gaacaccagggcattggttttctcaatgatcctcgaagactgaatgttgctctaacccgt
gctcggtatggtattgtgattctgggaaacccgaaagttttaagtaaacaaccgttgtgg
aatggtttattgactcactacaaggaacatgagtgtttggttgaagggcctctaaataac
ctgaaacagagtatggtccaattccaaaagcccaaaaagatatacaatgatcggcgtctt
ttctttggtggtggtcctggtgttgtgcctagtgacagtttttcatctgtttcctcatct
aaccaaaatgctgaaagaagaagtgctcgaggaaggggttcttatatacctcctagtcca
ccaaacggaacccataaacctggcttgcatccggcagggtatccaatgcctcgagttccc
cttccaccatttcctggtggccccgcatctcaaccatatgctattccaactcgtggagct
gtacatggaccggttggagcagtgcctcatgtccctcagcctggaagtcggggttttggt
gctggacgtggaaatgctggtgctcctattggcagtcatcttccacatcagcaaggcgcc
caacaatcttttggaaatattggatcaacttttaactttcctgctttggaaaatccaaat
agtcagccatctgtgggtgggccgttatctcaaccaggatttgtcaataatatgccagtt
caagggccaagccaaacttttcgtgatgggttttccatggctggcatgtctcaggatttc
ttgggtgatgacttcaaaagtcaaggatcacacgttccttacaatgttgctgacttctcc
acccaggcttcacaaagtggatatggtgttgattatgttacacaaggagcgcaaggtgga
tttccagggaacttcctgaaccagaattctcaggctggttattctcgctttggtactgga
aatgacttcatgtctcaggactatatgcctcatggatcacaaggtttatttactcaagct
gcctttaatgacccatcacaagatgatgcatcgcagagtcactatggtgtggctaacgct
agtcagcttcagtctcagggattgatgaattcactctactctcaacccttcactcattac
aacacacaaccactgaacttgcaagccccacagcagcagcagcagccacctcaaccgagt
cagagctctcaaaatcagaaaatccactacaatggttga
DBGET
integrated database retrieval system
