Cannabis sativa (hemp): 115717385
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Entry
115717385 CDS
T08987
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase CHR10
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csav03036
]
115717385
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115717385
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
115717385
NCBI-ProteinID:
XP_030502215
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All DBs
Position
5:48708058..48722273
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AA seq
882 aa
AA seq
DB search
MAYQRRLQAAAKFIENADRRAAEELVIPEELGVTATLKPHQVEGVSWLVRRYFLGVNVVL
GDEMGLGKTLQAICLMSYIKVQQMSPGPFLILCPLSVTDGWVSEMGRFAPKLKVSRYVGD
KDHRXNLHRTMYEHVKEQSSKADVLLVPFDVLLTTYEIALMDQDFLSQIPWHYAVIDEAQ
RLKNPSSVLYNVLXERFLMPRRLLMTGTPIQNNLTELWSLMHFCMPSVFGKLDQFLFAFK
EAANPSGNDQSIVKEQLKILKSIVGTFMLRRTKSRLIECGNLVLPPLTEITMMAPLVSLQ
KKVYVSILRRELPKLLAFSSGTSNYQSLQNTVMQLRKTCSHPYLFPGIEPEPYEEGEHLV
KASGKLIILDQLLHKLHDSGHRVLLFAQMTHTLDILQDFLELRRYSYERLDGSIRAEERF
AAIRSFSRQSAEGSLSSQAEENGAFVFLISTRAGGVGLNLVAADTVIFYELDWNPQVDKQ
ALQRAHRIGQMSPVLSISLVTEHTVEEVIMRRAERKLQLSHNVVGDDVENEENKESAGVE
GGDLRSVIYGLGIFDPDETSNDNIEELQSSKLKTMVERVVAMRHEQVAGNDGRKFEVNPT
DMLKGCLSSQQQEAVSLSSDSGFDEASYLLWVEKFKEASQTSGDQIIDLGRRRDLDESKR
AKLEAAKKKADEKKLLKWETLGYHSLSIKDPVIPSDDDSMLELGSVHFVYGDCTNPYDTC
PSEPAIIFSCVDDSGNWGRGGMFDALTKLSTRIPEAYSRASEFKDLHLGDLHLIRVNENS
DEQNTRQNTDGNTSLWVGLAVVQSYNPRRKVPRSKISIPDLECCLSKASFTAAQNSASIH
MPRIGYQAGSDRSEWYTIERLLRKYASIYGIKIFVYYYQRSS
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggcttaccagcgaaggctccaggctgcggcgaaattcatcgaaaacgctgacagacgc
gccgccgaagagctagtgattcctgaagaacttggcgtgactgccactctgaagcctcac
caagtcgaaggtgtttcatggctcgtacggcggtattttctcggcgtcaacgttgttctc
ggagacgagatgggactagggaagactttgcaagctatctgtttgatgagctacattaag
gttcaacagatgtcacctgggccatttttgatattatgtcctctaagtgtaacggatggt
tgggtatcggagatgggtagatttgctccaaaacttaaagtttcacggtatgttggggac
aaagatcaccgtncgaatttacatagaacaatgtatgagcatgttaaagaacagtcctcg
aaagctgatgttttgttggttccttttgacgtgttgttaacaacatatgagatagcattg
atggatcaggattttctttctcaaataccatggcattacgcagtaattgatgaagctcaa
aggcttaaaaacccttctagtgttttgtataatgtcctgnaagagcgttttctcatgcca
agacgactattgatgactggcacacctattcaaaacaatctaactgaactttggtctttg
atgcacttttgtatgccttcagtctttgggaagttggaccaattcctttttgcattcaag
gaagctgcaaatccctcagggaatgatcagtctatagtcaaggagcagttaaaaatttta
aaaagcatagtgggaactttcatgcttcgacgtacaaaatcaagacttattgagtgtgga
aatttagtcctaccaccacttactgagataactatgatggcaccgctagtcagcctgcaa
aagaaagtgtacgtgtcaattttgaggagagagctccctaaacttcttgcattttcatct
ggaacctcaaattaccagtccttacagaatactgtaatgcagttacgaaaaacttgtagc
catccgtacctattccctggcattgaacctgaaccatatgaagaaggtgaacaccttgtt
aaggccagtggaaaacttattattttggaccagctacttcacaagctacatgattcggga
catcgtgttcttctttttgctcagatgactcatacactggacattctacaggattttttg
gagttacgaagatattcttatgagcgtcttgatggatcgattcgagctgaggagcggttt
gctgctataagaagtttcagtagacaatcagctgaaggtagtttgagttcacaagctgaa
gaaaatggtgctttcgtatttctgatttctactagggctgggggagttggtttgaatctt
gtagctgctgatactgtcattttctacgagctagactggaatcctcaggttgacaagcag
gctttgcagagagctcaccgtattggtcaaatgagccctgtgttgtctattagtctggtt
actgagcatactgtggaagaggtcattatgcggagagcagaaaggaaattgcagcttagc
cataatgttgtgggagatgatgttgaaaacgaagaaaataaagaatctgcaggagttgaa
ggaggtgatttgcgttctgtcatatatgggttaggtatatttgatcctgatgagactagc
aatgacaatattgaggaattacaaagctcaaagttgaaaacaatggttgagagggtagtt
gcaatgcgtcatgaacaagttgctggtaatgatggcaggaaatttgaagttaatccgaca
gatatgttgaagggatgtctttcttctcaacaacaagaagctgtatctttgagttctgat
tctggttttgatgaggcatcatacctcttgtgggttgaaaaatttaaggaggcatcacaa
acaagtggagaccaaatcattgatttgggaagaagaagagatttagatgagagtaaacgt
gctaaacttgaggctgcaaagaaaaaggctgatgagaagaaattgttgaaatgggaaacc
cttggctatcactcgctgtctatcaaagaccctgttatcccttcggatgatgattcgatg
ttagaattgggctctgttcactttgtttatggagattgtactaatccttatgatacttgt
ccatctgagcctgccattatattcagctgtgttgatgattctggaaattggggacgtgga
ggaatgtttgatgcactgactaaactgtctacaagaataccagaggcttatagccgagct
tctgaatttaaggacctacatcttggtgatcttcatctcataagagtgaatgagaattct
gatgaacagaatactcgccagaatacagatggtaatacttctctatgggtgggtttagcc
gttgtacagtcttacaatcctaggcgaaaagtacctcgtagtaagatatctatcccggat
ctggaatgttgcttatcaaaggcatcctttacggcagcacaaaactctgcttcaatacac
atgccacgaattggttaccaagctggatcagatcgttctgagtggtacaccattgaacgt
cttcttcgaaaatatgcatccatttacggcataaaaatctttgtgtactattaccaaagg
tcatcgtga
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