Cannabis sativa (hemp): 115718149
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Entry
115718149 CDS
T08987
Name
(RefSeq) uncharacterized protein LOC115718149
KO
K12589
exosome complex component RRP42
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115718149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115718149
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115718149
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
115718149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
115718149
NCBI-ProteinID:
XP_030502969
UniProt:
A0AB40EA37
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Position
5:complement(10788644..10791668)
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AA seq
288 aa
AA seq
DB search
MVGLSLGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRLGGTDVIASV
KAELGRPSQLQPDKGKVAINVDCSSTAAPVFEGRGGEELSTELSFALQCCLLGGKSGSGA
GINPSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVASSASAG
DDQPEVEISDEEFMQFDTSGIPVIVTLTKVGKHYIVDATAEEESQMSSAVSISINRKGHV
CGLTKRGGAGLDPSIILDMISVARHVSDHQLMNKLDSEIAAAEATEEE
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggtgggactatccctgggagagaaacatttcatacagggtggtatcgctcaagacctt
cgttctgatggccggaaaagattaacttacaggcctatctatgttgaaacaggagtcatt
cctcaggcaaatggttctgccagggtcagattaggtggcacagatgttattgccagtgtg
aaggctgagcttgggaggccgagtcaattgcaacctgataaaggaaaggttgctattaat
gttgattgcagttcaaccgcagccccagtgtttgagggcagaggaggtgaggaattgtca
acagaactctcatttgctctacaatgttgtctcttgggtggtaaaagtggctcaggggct
ggaatcaatccctcatctttaatagtggtggaaggaaaaatttgttgggatctctatata
gacggccttgttgttagttcagatgggaatctgctagatgctctaggtgctgctataaag
gctgctttgagcaatacaggcatcccaagagtccaggttgcttcaagtgcctcagctggt
gatgatcaaccagaggtcgaaataagtgatgaagaattcatgcagtttgacacatctgga
atccctgtcatagtcacattaacaaaggtgggtaagcactacattgtggatgctactgca
gaagaagaatctcaaatgagctcagctgtttcaatctctatcaatagaaagggccatgtg
tgtggtttgaccaaacgtggtggtgcaggcttagatccaagcatcattcttgatatgatt
tcggtggcaagacatgtcagtgaccaccagctaatgaacaaattggattctgagatagct
gcagctgaagctaccgaagaagaataa
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