Cannabis sativa (hemp): 115718181
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Entry
115718181 CDS
T08987
Name
(RefSeq) serine/arginine-rich splicing factor RS40 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115718181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115718181
Spliceosome [BR:
csav03041
]
Common components
Common spliceosomal components
SR proteins
115718181
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
RNA_bind
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
115718181
NCBI-ProteinID:
XP_030503004
UniProt:
A0A803PQT5
LinkDB
All DBs
Position
5:13998085..14002551
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AA seq
376 aa
AA seq
DB search
MRPIFCGNFEYDARQSDLERLFGRYGKVDRVDMKSGFAFIYMEDDRDAEDAIRGLDRREF
GRKGRRLRVEWTKHERGIRRPGGSRRSSTNTRPSKTLFVINFDPYHTRTKDLERHFDAYG
KIVSVRIRRNFAFVQYEIQEDATKALEATNMSKLMDRVISVEYAVRDDDDERRDGVSPDR
ARDRSPERGGRDRRRSPSPYRRERGSPDYGRGTSPSAYRRDRGSPDYGRGRSTSPYRKDR
GSPDYGRGHSPNPYRRDRGGLEHGRGPSRSPHHRREKVSVDRGHAPSRSPYERERVSPEN
GRVASASPYKRKRASPENGRGLSRSLSPMERERTNLDNGRELSPNSVPEPKDSPSYVGPE
SPVNERYQSPSPQAEE
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgaggcctattttctgtggaaactttgagtatgatgctcggcagtcggatctggaacga
ctttttggaagatatgggaaggttgatagggtggatatgaagtctggattcgccttcatt
tacatggaagatgacagagatgcagaggatgctattaggggtcttgataggagagaattt
ggtcgaaagggacgaaggcttcgcgtagaatggactaagcatgaacgaggaattagaagg
cctggtggctctagaagatcatcaactaatacaaggccgtcaaagaccttatttgttata
aattttgatccttatcacactagaactaaggatttggagaggcactttgatgcatacggg
aagatagttagtgtaaggattagaagaaattttgcatttgttcagtacgaaatacaggaa
gatgctactaaagcattggaggctacaaacatgagcaagttgatggatagggttatttca
gttgaatatgcagtacgggatgatgatgatgaaaggagagatggagtaagccctgataga
gcacgtgatagatcaccagaaagaggtggccgggatagaagacgatccccaagtccctat
cgaagagagagaggtagccctgattatggtcgtggcaccagccccagtgcatacagaagg
gacaggggtagtcctgattatggtcggggtcgtagcacaagcccctataggaaagacagg
ggaagccctgattatggtcgtggtcacagtccaaatccttataggagagacaggggtggc
cttgagcatggtcgtggtcctagccgtagtcctcatcaccgaagagaaaaggtgagtgtt
gatcgcggtcacgctcctagtcgtagtccttatgaaagggagagagttagtcctgagaat
ggtcgtgttgctagtgctagtccttacaaaaggaaaagggcgagtcctgagaacggtcgt
ggtcttagtcgtagtctcagtcccatggaaagagagaggactaaccttgataatggtcgt
gaactaagccccaattctgtacctgaacctaaggacagtcccagttatgttggacccgaa
agcccagtgaatgagaggtaccaaagtccctctccgcaagctgaagaatga
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