Cannabis sativa (hemp): 115718976
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Entry
115718976 CDS
T08987
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115718976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115718976
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
115718976
mRNA cycle factors
Common to processing body (P body) and stress granule
115718976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
115718976
NCBI-ProteinID:
XP_030503670
LinkDB
All DBs
Position
2:complement(83029055..83037438)
Genome browser
AA seq
987 aa
AA seq
DB search
MMIIQVDKMSAPSSRERAQQLYDKINELENKRRRSAQARIPSDPNAWQQIRENYEAIILE
DHAFSEQHSIEYALWQLHYKRIEELRAHFNAALSSSGPNSAQNVKGPTRPDRVTKIRLQF
KTFLSEASGFYHDLIVKIRAKYGLSLGYFSEDSDNQSFKEKDGKKFAEVKKGLISCHRSL
IYLGDLARYKGLYGEGDSKTREFAAASSYYMQAASLLPSSGNPHHQLAILASYSGDELVA
VYRYFRSLAVDSPFSTARENLIVAFEKNRHSYSQLSGDAIARGCKDSPVKLSGKARGKGE
GKHVSKDPNAESKPVKEGASSSQERYKSFCVRFVRLNGILFTRTSLETFAEVLSLVSGGM
RKLLSSGPEEEPTFGADAVESGLIVVRLVAILIFTVHNVNRESEGQTYAEILQRNLLLMN
ACIAVFELMSHIMERCVQLHDPSSSFLLPGILVFAEWLACCPDVAAGNDVDDKHGAIRSK
FWNVFISFLNKLLSSGSVSIDDDEDDTCFNNMSRYEEGNTENRLALWEDFELRGYAPLIP
AQTLLDFSRKHSFGSDGQKERKARMKRTFAAGKALASVVRVDKKAIRFDSRLKKFVIGAD
PEIMDDMVHAFSGVPNRDNNLGQENQAADKATNMAISQTNRHLLIEGDEEDEVIVFKPIV
AEKRSEAADSNWATYDGLKSIQNASAGDVAFSGSSISALPDNIYHQTAFDGHPLASVPVS
NAVPQHFQPVQPYVSKWMMGEEAFLANNLNGLRLMGNGHLVKSEIQENHPPMPSVPVQQS
FNVTNGSAFYNNTKAAPDTLIPSMHDIFASSGAITNSFSVKTSAATSTGLRKNPVSRPSR
HLGPPPGFSRVLPKHVNESVSGSDLASESPIMDDYSWLDGYQVPLSTKSSGLNNSINYPS
NPHSVSISNGLSGTMNFPFPGKQVPTMQFQSDKQNGWQDSSMLDSLKLQHEQQLQQQQQQ
VTNGNQHLNPPPEQYQGQSGWTGRYFV
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgatgataatacaggtagataaaatgtctgctccttcttcaagggagcgtgctcagcag
ctgtatgataagataaatgagttggagaataagcgtcggaggtcagcccaggctcgaatt
ccatcagatccaaatgcatggcagcagattcgggagaattatgaggcaataattcttgaa
gaccatgcattttctgagcagcacagtattgaatatgccttgtggcagttgcattataag
agaattgaggaactaagagcacatttcaatgctgccctttcgtcttccggtccaaattct
gctcaaaatgtgaagggccccacaagacctgatcgagtgacaaaaataaggctgcagttc
aagacttttctatcagaagctagtggtttttaccatgatttaatagtgaaaatcagagca
aagtatgggttgtctctgggttatttctctgaggattcagataaccaaagcttcaaggag
aaagatggaaaaaagtttgctgaagtgaagaaaggtctgatatcctgccatcgtagtttg
atatacttgggtgaccttgcacgttacaaaggattgtatggagagggtgactcaaagact
cgtgagttcgctgcagcttcgagttactatatgcaagctgcttctcttttgccatctagt
gggaatcctcaccatcagcttgcaattttggcttcttattcgggggatgaattggtggct
gtttatcgatattttcgtagtcttgcagtggatagtcccttctcaactgcgagagaaaac
ttaattgttgcatttgaaaagaaccgccatagttattctcaactctctggggatgctatt
gcacgaggatgcaaggattcccctgtgaaattatctggcaaagctagagggaaaggggag
ggaaagcatgtttccaaagatccaaatgctgaatctaaacctgtcaaggaaggagcatct
agtagtcaagagagatataaatcattttgtgtccggtttgttcgtctaaatggcattctc
tttactcgcacaagcttggaaacatttgctgaagttctttcgttggtgagtggtggcatg
cgcaagttgctgtcatctgggccagaagaagagcctacttttggtgcagatgctgttgag
agtggacttatagttgtcaggcttgtggccattcttatattcacagttcacaatgtgaat
agggaatctgagggtcagacatatgcagaaattctacaaaggaatcttcttctaatgaat
gcatgcattgctgtttttgagttgatgagccacataatggaaagatgtgtgcagctgcat
gatccttcttcaagtttcctcttacctggcattctagtttttgctgaatggttagcttgc
tgtccagatgttgcagctggtaatgatgtggacgataaacatggtgctattagatcaaag
ttttggaacgtctttatatcatttttgaacaagctcttgtcatctggttcagtgtccata
gatgatgatgaagatgatacttgctttaataacatgagtaggtatgaagaaggaaatact
gaaaaccgcttggctttgtgggaggactttgagttgagaggttatgcgccacttattcct
gctcaaacccttttagatttttccagaaaacattcatttggaagtgatggtcagaaagaa
agaaaggcccgtatgaaaaggacttttgcagcagggaaggctcttgccagtgttgtcagg
gttgataaaaaagcaatcaggtttgattcaaggctaaagaagtttgttattggtgctgat
cctgaaattatggatgacatggtacatgcattttcaggcgttccgaatagggataataat
ctaggacaagaaaatcaagctgctgacaaagcaacaaatatggcaatttcacagaccaac
aggcaccttcttatagaaggagatgaggaggatgaagtaattgtcttcaagccaatagtg
gccgagaagcgatccgaagctgctgattctaattgggctacatatgatggtctgaagtct
attcagaatgcttctgcaggtgatgtggcctttagtggtagttccatttcagcccttcct
gataatatttaccatcagacagcttttgatggtcatcccctagcatctgtgcctgttagt
aatgctgttccccaacattttcaaccagttcaaccttatgtatcaaaatggatgatggga
gaagaagcttttcttgctaacaacttaaatggtttgagattaatggggaatggacattta
gtaaaatctgaaatccaagaaaatcatcctcccatgccttcagttccagttcaacagtct
ttcaatgttactaatggcagtgctttttacaataacacaaaagcagctccagatacttta
atcccatccatgcatgatatctttgcatcttctggagcaatcacaaatagtttttctgta
aagacatctgctgctacatccacaggtttgcgaaaaaatcccgtaagtcgtccgagcagg
catcttggcccccctcctggttttagccgtgttcttcctaagcacgtgaatgaatctgtt
tctggttctgatctggcaagtgaaagtcccatcatggatgactatagttggttagatgga
tatcaggtgcccttgtccacaaaaagttctggcctcaataattcaattaattatccttca
aacccacattctgtctccattagcaatggcttgtctggaactatgaacttccctttccct
gggaaacaggttccaaccatgcaattccaatcagataagcaaaatggatggcaagatagc
tcaatgcttgacagtcttaaattacaacatgaacagcagctgcagcaacagcaacaacaa
gtcactaatgggaatcagcacctcaatccaccaccagagcaatatcaaggacagtctggc
tggaccggtcgttactttgtgtga
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