Cannabis sativa (hemp): 115718995
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Entry
115718995 CDS
T08987
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115718995
03036 Chromosome and associated proteins [BR:
csav03036
]
115718995
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
115718995
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
115718995
SLIK complex
115718995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
115718995
NCBI-ProteinID:
XP_030503689
LinkDB
All DBs
Position
2:83212263..83245074
Genome browser
AA seq
1747 aa
AA seq
DB search
MAFFRNFSSETVSPCDLEEKNQGTSVSRIRSSAGNEDVDVTSSEKEFDINMDAPDQSEGE
LDDAIRSQNEATVNDGVISLTNSQPSGRRSAVAGKWGSTFWKDCQPMHSQNGSDSGQDSD
GKNADGLEYNSSDDREQRLDSEDDDGPKDTTKGHQGPSDVPTDEMLSDEYYEQDGKEQND
LMHYRGFPHSMGSNSKQQLKPAAGNKNTARSSRILNGSEDFGYDDDNNNDDADYEEDEDE
DDPDDADFEPDYGITNERTLNKDKNWGGEESEEEEDDSDNELDMSDEDDSYFARKSKSKQ
RGKSVHIVKSTRERKSYQGYAHQRRGKSSFEDDESLGEDSESDSDVGFKSLRRGSHQRKT
SGRSTLSINSTRRNNEVRTSTRSVRKVSYVESDESEDADESKKKNLQKEEPEEEDSDCIE
KVLWHQPKGVAEEALRSKRSTDPVLLSYLFDSEPNWNEVEFLIKWKGQSHLHCQWKSFSE
LQNLSGFKKVLNYTKKVTEDVRFRKTVTREEIEVNDVSKEMDLDLIKQNSQVERIIADRV
SKDSSGDVVPEYLVKWQGLSYAEATWEKDVDITFAQDAIDEYKAREAEIAVQGKLVDPQR
RKSKASLRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSM
LGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPEMNIIVYVGTRASREVCQQYEFYNN
KNVGRPIKFNALLTTYEVVLKDKAVLSKIKWCYLMVDEAHRLKNSEAQLYTTLSEFSTKN
KLLITGTPLQNSVEELWALLHFLDPDKFTSKDDFVQNYKNLSSFNENELANLHTELRPHI
LRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVE
LKKCCNHPFLFESADHGYGGDSGTNESSKLERIILSSGKLVILDKLLVRLHETRHRVLIF
SQMVRMLDILAEYMSHRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLG
INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKM
VLDHLVIQKLNAEGRLEKKEAKKGSYFDKNELSAILRFGAEELFKEEKNEEESKKRLLSM
DIDEILERAEKVEEKEAEGEQGNELLSAFKVANFGTTEDDGSFWSRWIKPDAVAQAEEAI
VPRAARNTKSYAEAPQPERSSKRKKKESEPLERSQKRRKADYSAPAAPMIEGASAQSKRW
SCGNLSKRDALRFSRAVLKFGNESQISLIAEEVGGAVAAAQTAAQIELFNILIDGSKEAV
EVGSLDPKGPLLDFFGVPVKANDVFSRVQELQLLAKRISRYEDPIAQFRALTYLKPSNWS
KGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELQHHETFLPRAPNLRD
RANALLEMELAAFGGKNSSAKIGRKGSKKDRGNILNVPISQSRAKKGKAGSVLIAGKMNK
DRSARSQKVEPLVKEEGEMSDNEEVYEKFKEEKWMEWCEDVMVDQMKTLGRLQRLQTTSA
NLPKDKVLSKIRNYLQLLGRKIDQIVIEHEEEPYRQDRMTMRLWNYVSTFSNLSGERLHQ
IYSKLKLERGEEAGPSHANANGDSNPFRQRGYRSMENFPGSEPFLKGIDTAKFEAWKRRR
RAETESHIQVQAPPQRSLSNGTRISDPSSLGILGAAPFENRRSGNDRPYRMRQTGIAPKQ
GFSSGVQ
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggcattttttagaaatttttccagtgaaacagtttccccttgtgacctggaagaaaaa
aatcaggggacgagtgtaagcagaattcgcagttcagcaggtaatgaggatgtagatgtc
acatcaagtgaaaaggaatttgatataaacatggatgcaccagatcaaagtgaaggtgaa
ctggatgatgctattaggtcacaaaatgaggcaactgttaatgatggtgtaataagttta
acaaactcgcaaccatctgggaggagaagtgctgtggctggaaaatggggttcaaccttt
tggaaggattgccagcctatgcactcgcagaatggttctgattctgggcaagattctgac
ggtaaaaatgcagatggattggaatataattcgtctgatgacagggagcagagattagat
tcagaggatgatgatgggccaaaagacacaaccaagggtcatcaaggcccttcagatgtc
cctacagatgagatgctgtctgatgaatattacgaacaagatgggaaagagcagaatgat
ttgatgcattatagagggtttcctcattctatggggtctaattctaagcaacaattaaag
ccagctgcagggaataagaatactgcaagatcttctagaatattgaatggcagtgaagat
tttggctatgacgatgacaacaataatgacgatgctgattatgaagaggatgaagatgaa
gatgatcctgatgatgcagattttgaacctgattatggcattaccaacgaacgcacattg
aacaaggataaaaattggggaggtgaagaatctgaagaagaagaagatgacagtgataat
gagctggatatgtcagatgaagatgattcctattttgcaaggaaatcaaaaagtaagcaa
cgtggtaaaagtgtacatattgttaaatctaccagagaacgtaaatcataccaagggtat
gctcatcagcgaagaggtaaatcatcatttgaagatgacgagtctttgggggaggactct
gaaagtgatagtgatgtgggttttaaaagcttgaggagaggttcacatcagcgaaaaact
agcggtcgatctactttgtccataaattcaaccagacgaaacaatgaggtacgcacttct
actaggtctgtgcggaaggtgtcatacgttgaaagtgatgaaagtgaggacgctgatgaa
agcaagaagaaaaatctccaaaaggaggaacctgaagaggaagatagtgattgtattgag
aaggtgctgtggcatcaaccaaagggcgtggctgaagaagctcttaggagtaaacggtca
actgatcctgttctactcagctacttgtttgattctgagccaaattggaatgaggtggag
ttcttgataaaatggaaaggccaatcccatttgcactgtcagtggaaatcattttctgag
cttcaaaaccttagtggttttaagaaggttttgaattacactaaaaaggtaactgaggat
gttaggttcaggaagacagtcacacgggaggagattgaggttaatgatgtgagcaaggag
atggacttggacctcatcaagcaaaatagtcaggtagaaaggataattgcagaccgcgtt
agtaaagacagttccggagatgtagtaccagaatatctagtcaagtggcaagggttatct
tatgctgaagcgacatgggaaaaggatgtagatatcacattcgcccaagatgccattgat
gagtacaaggcacgtgaggctgaaattgctgtacagggaaaattggtagatccccagcgc
agaaagagcaaagcaagtttacggaagcttgatgaacagcctgaatggttgaggggagga
aagctacgtgattatcagcttgagggtttaaattttcttgtcaatagttggcgaaatgat
acaaatgtaattttagctgatgagatgggtcttggtaaaactgttcagtcagtatccatg
cttgggtttttacagaatgctcaacaaatccatgggccatttcttgttgttgtaccatta
tccacattgtcaaactgggcaaaggaatttaggaagtggcttcctgagatgaatattatt
gtatatgttggtactcgtgcaagtcgagaggtttgtcagcagtatgaattctacaacaac
aaaaatgttgggaggccaataaagtttaatgcattattgactacatatgaagtagttctg
aaagataaagcagtcctttcaaagatcaagtggtgctatctgatggttgatgaagcgcac
aggttaaaaaatagtgaagcacagctgtatacaaccctttcggaatttagcaccaagaac
aaattgttgataactggtactccattacagaacagtgtggaagagttgtgggccctgctt
catttccttgatccagataagttcacgagtaaggatgattttgttcagaattataagaat
cttagctcttttaatgagaatgagcttgctaatcttcacacggaattaagacctcatatt
ctccgaagagttattaaggatgtagagaaatctttgcctccaaaaattgagcgaattctt
agggttgagatgtcaccacttcagaaacagtactataagtggatattggaacgcaacttc
catgatttgaacaaaggagttcgtgggaatcaggtttcacttttaaatattgtggttgag
ttgaagaagtgctgcaatcatcccttcctgttcgaaagtgcagaccatggttatggtggc
gactcaggaaccaatgagagcagtaaacttgagaggataatcttgagcagtgggaagttg
gttatacttgataagctgcttgttaggttgcatgagacaaggcatcgtgttttaattttt
tctcagatggtaagaatgttggatatactggctgaatatatgtcacatagagggtttcaa
tttcaaaggctagatggaagcactaaggctgaactgcgtcagcaagcgatggatcatttt
aatgcacctggtagtgatgatttctgctttctactttcaacccgggcaggtggcctaggt
atcaaccttgcaacagcagatacggttatcatatttgattcggactggaatcctcaaaat
gacctacaggcaatgagtagagctcatagaatcggccaacaagaagttgtgaacatctac
agatttgtcacaagcaaaagtgttgaggaagatatcttggaacgagctaagaaaaaaatg
gttcttgaccacctggtgatccagaaattaaatgcagaaggcagattggaaaagaaagaa
gcaaagaaggggagttattttgacaagaatgagctttcagctattttgagatttggggca
gaggaactttttaaagaagagaagaatgaagaagaaagtaagaaaaggctcttgagtatg
gatattgatgagattcttgaaagagcagagaaggtggaagagaaggaagctgaaggagaa
cagggcaatgaattattgagtgcttttaaggttgccaattttggcaccactgaagatgat
ggaagtttctggagtcggtggataaagcctgatgctgtagcccaagcagaagaagctatt
gttccacgtgctgcaagaaacactaagagttatgcagaagctcctcaacctgagcgaagt
agtaaacgaaagaagaaagaatccgagccactggagagatcccagaaacggcgcaaagca
gactattcagctcctgcagcgcctatgattgagggagcatctgctcaatcaaaaagatgg
tcctgtgggaatctgtcgaagagggatgcattacgtttttcacgtgcggtcctgaaattc
ggaaatgagagccaaatcagcttgatagcagaggaggttggaggtgcagttgcagcagct
caaactgctgcacaaattgagcttttcaatatattgatagacggcagtaaagaggctgta
gaagtaggaagtttggacccaaagggccccttgttggacttttttggagttcctgtgaag
gctaatgatgtattctcacgtgttcaagaacttcaacttttagctaagcgcatcagtcgt
tatgaagacccaattgcacaattccgtgccttgacttacctgaaaccttcaaactggtca
aaaggatgcggttggaatcaaattgatgatgcaagattacttttgggaatccattaccat
ggatttggcaattgggaaaagataagattagacgaaaggcttggccttatgaagaagatt
gctccagtggaacttcaacatcacgaaacttttctacctcgtgctcctaatttaagagac
cgtgctaatgctctacttgaaatggaactcgcagcttttggagggaaaaattccagtgct
aaaataggtcggaaaggttctaagaaagatagaggaaatattcttaatgtacctatatct
caaagccgagccaagaaaggaaaagcggggtctgttctgattgctggtaaaatgaacaag
gaccgatctgcaagatcccaaaaagttgaaccactagtgaaagaggagggtgaaatgtca
gataatgaagaggtatatgagaagtttaaggaagaaaaatggatggaatggtgtgaagat
gtaatggttgatcaaatgaaaactttggggcgtcttcagcgattgcaaactaccagtgct
aatcttccaaaggataaggtgctttcaaaaattagaaattatttacaacttcttggacgg
aagatagatcaaattgttattgagcatgaggaggagccatacagacaagacaggatgaca
atgcgattgtggaactatgtgtctaccttttcaaatttgtctggggagagactgcatcaa
atttattctaaactaaaattagagcgtggtgaggaggcaggtccttcccatgctaatgcc
aatggggattcaaatcctttcaggcaaagaggttacagaagtatggaaaacttcccaggg
tcagagccctttctgaaaggtatagacacagccaaatttgaagcatggaaacgaaggaga
agagcagaaaccgagagtcatatccaagttcaggccccacctcaaagatctttgagtaat
gggacccgaatatcagaccccagctcattggggattcttggggcagcgccatttgaaaat
agacgtagcggtaatgacaggccctataggatgcgtcaaactggaatagccccaaaacaa
ggtttctcatcaggtgttcagtag
DBGET
integrated database retrieval system
