Cannabis sativa (hemp): 115718999
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Entry
115718999 CDS
T08987
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03013
Nucleocytoplasmic transport
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115718999
03015 mRNA surveillance pathway
115718999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115718999
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115718999
mRNA cycle factors
P-body specific factors
115718999
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
115718999
NCBI-ProteinID:
XP_030503701
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All DBs
Position
2:92126355..92131030
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AA seq
478 aa
AA seq
DB search
MKMKGLLDRTKVVLRHLPPSISKTALLDQVDSVFAGRYNWLSFRPSNNSQKHSFSRAYID
FKRPEDVIEFAEFFEGHVFVNEKGLQFKTIVEYAPSQRVPKLWSRKDGREGTINEDPEYL
DFLELLAKPSENLPSAEIQLERREAERAVLGVGKDIPIITPLMDFVRQKRAAKGGSRRPL
PNGKLSRKNTGSSARSSNSALSKRGSDRRRNATTMYVLRDSAKNTTMKDKSKYVLAAKRE
NQLLSDKSTLSSTVGAEVSEESGKKKVLLVNGKERGISHNQRHESNGGRVIKSILQNKNA
LPNRSSGAHCELQMQALNVEDRRHSRPQQGQLVLKDANGASDCKFVGSDVQGFCGEKHEK
RTRNKDRPDRGVWAPRNNSEGASLNAQSLSSAQPPRALDSIEGGHGNMKVETTNVRSKDI
KILRSGSGSHSALDNGFHKHVGRRGSTNSVKDDSKRVGSSGYGSQEKQVWVQKSSLGS
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaagggactgttggatcgaaccaaagtggtccttcgccacttgcctccttcc
atttccaagaccgctctcctcgaccaagtcgactctgtctttgctggtcgctacaattgg
ctctctttccgtccttccaacaacagccagaagcattcattttctagagcgtacattgac
ttcaaaaggccagaagatgttattgaatttgccgaattttttgagggacatgtgtttgtt
aatgagaagggattacagtttaaaactattgttgagtatgcaccttcacaacgtgttccc
aaactatggtcgagaaaggatggacgtgaaggaactataaacgaagatcctgaatatctg
gactttcttgaacttcttgcaaagccttccgagaatcttcccagtgcggaaatacagttg
gagagaagagaagcggaaagagctgttttaggtgttggaaaagacattcctattataacg
ccgctgatggactttgttcgtcaaaaaagagctgcaaagggtggatctcggaggccactg
cctaatggaaaattaagccgaaaaaataccggatcatcagccagaagttctaattcagca
ttatcaaagcgaggatctgatagaagaaggaatgcaactactatgtatgttttgagagat
tctgcgaaaaatacaactatgaaagacaagtcaaaatatgttcttgcggctaagcgggag
aatcagctgctctctgacaagtccactttgtcttctactgttggagctgaagtgtcagag
gaaagtgggaaaaagaaagttcttcttgtgaatggaaaagaaagggggatatctcataac
cagcgtcatgaaagcaatggaggaagggttatcaaaagcatacttcaaaacaagaatgcc
cttccaaatcgttcttctggagctcactgtgagctgcaaatgcaggctctaaatgtggag
gacagacgccattctcgacctcaacaaggtcaattggttttgaaggatgctaatggtgct
tcagactgtaagtttgttgggagtgacgtgcaaggcttttgtggtgaaaaacatgagaaa
cgaacaaggaataaggatagacctgatcgtggtgtatgggctcctcgtaataattctgaa
ggagcttctctaaatgctcagtccttgtcatcagcacaacctccacgggccttagattct
atagaaggaggtcatgggaatatgaaagtggaaacaaccaatgtaaggagcaaagacatc
aaaatccttcggagtggaagtggcagccattcggctttagataatggctttcacaaacat
gttggccgtcgtggatcaacaaatagtgtaaaggacgattcaaagagagttggttcctct
ggttatggttcgcaggagaaacaagtatgggttcagaagtctagtttgggttcttag
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