Cannabis sativa (hemp): 115719277
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Entry
115719277 CDS
T08987
Name
(RefSeq) phytochrome A-2
KO
K12120
phytochrome A
Organism
csav
Cannabis sativa (hemp)
Pathway
csav04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
115719277
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
115719277
NCBI-ProteinID:
XP_030504112
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All DBs
Position
2:complement(52091290..52096849)
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AA seq
1127 aa
AA seq
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MSSSRPSHSSSNSGRSKHSARIVAQTTVDAKLHAEFEESGSSFDYTSSVRVSNSVSADVQ
PRSDKVTTAYLHHIQKGKLIQPFGCLLALDEKTLKVIAYSENSPEMLTMISHAVPSVGDH
PVLGIGTDVRTIFTAPSASALQKALGFGDVSLLNPILVHCKTSGKPFYAIVHRVTGSLII
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQALPSGSMERLCDTMVQEVFELTGYDRVM
AYKFHDDDHGEVVSETTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCCAKHVKV
FQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDGDDEGDSPESVQPQK
RKRLWGLVVCHNTTPRFVPFPLRYACEFLVQVFAIHVNKELELENQIVEKNILRTQTLLC
DMLMRDAPLGIVTQNPNIMDLVKCDGAALLYKNKVWRLGITPSDSQLHDIASWLSEYHMD
STGLSTDSLCDAGYPGALSLGDIVCGMAAVRITSKDVIFWFRSHTAAEVRWGGAKHDPGE
KDDARKMHPRSSFKAFLEVVRTRSFPWKDYEMDAIHSLQLILRNAFKDMDTLDSNTVTVN
TKLSDLRIEGMQELEAVTGEMVRLIETATVPILAVDIDGLVNGWNTKISDLTGLPVERAI
GKHLLTLVEDSSTDVVKSMLDLALEGKEERNIQFEIKTYGSRNDSGPISLVVNACASRDL
HGNVVGVCFVAQDLTAHKTILDKFTRIEGDYKAIVQNRNPLIPPIFGSDEFGWCSEWNPA
MTKITGWKREEVIDKMLMGEVFGINMACCRLKNQEAFINLGVVLNNAMTGQESEKIPFGF
LARNGKYVECLLCVSKKLDREGSVTGVFCFLQLASLELQQALHVQRLMEQTAVKRLKALA
YMKRQIRNPLAGIIFSRKLMESTELGGDQKQLLNTSAQCQRQLSKILDDSDLDTIIDGYS
DLEMVEFTLGEVLVASMSQVMMKSKAKGITIEQNAAEETMNDTLYGDSLRLQQVISDFLL
IAINFTPSGGQIVIVANLSKDQLGESVHLVRLDFRLIHTGVGIPEALLNQMFGNEGDVSE
EGISLLISRKLVKLMNGDVQYLKEAGKSTFIISVELAGAHSKAKASK
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcaagacccagccactcgtccagcaattcggggcgatctaaacacagtgct
agaatagttgctcaaacaactgttgatgcaaaactccatgctgagtttgaggagtcaggt
agttcatttgactacacaagctcagtacgtgttagcaactcagtttctgctgatgtacaa
ccaaggtctgacaaagtaaccaccgcttaccttcaccacatacaaaaagggaaactgatc
cagccatttgggtgcttgttggccttggatgagaaaactttgaaggtcattgcatacagt
gagaattcacctgaaatgctgaccatgatcagtcatgcggttccaagtgttggagatcac
cctgttctaggcattggaacagatgtgaggactatttttactgctcccagtgcctctgca
ttgcaaaaggccttgggatttggagatgtttctctattaaatcccatattagttcattgc
aagacctctggaaagcccttttatgcaattgttcaccgggtaaccggtagcttgatcatt
gactttgagccagtgaaaccttatgaagtccccatgactgctgccggggccctgcaatca
tacaaactagcagctaaagcaattactagattgcaggctctgcctagtgggagcatggaa
aggctttgtgacactatggtccaagaggtcttcgaactcacggggtatgacagggtgatg
gcctataaatttcatgatgatgatcatggggaggtggtgtctgagactacaaagcctggt
ctggaaccatatctgggtttacattacccagccactgatattcctcaagctgcaagattt
ttatttatgaaaaataaagttcgtatgattgtggattgttgtgcaaaacatgttaaggtg
tttcaggatgagaagcttccgtttgatctaaccttgtgtggttcaactttaagggctcct
cacagctgccatttacaatacatggagaacatgaattccattgcttccctggttatggct
gtagtagtcaatgatggagacgatgagggtgacagccctgaatctgtgcagccacaaaag
agaaagagactctggggtttagttgtgtgccacaatacaactccgagattcgttcctttc
cctctgaggtatgcctgtgagttcttggttcaagtatttgccatccatgtgaataaggag
ttagaactagaaaatcagatcgttgagaagaacatcctgaggacacaaacactattgtgt
gacatgctgatgcgtgatgcacccttgggtattgtgacacagaacccaaatataatggac
ctggtgaaatgtgatggggctgctctcttgtacaaaaacaaggtatggaggctaggaatc
actccaagtgattctcagcttcatgacatagcctcatggctctctgagtaccatatggat
tccactggtttgagtacagatagcttgtgtgatgcaggctatcctggggctctctctcta
ggagatatagtatgtggaatggcagctgtgaggataacatccaaagacgtgattttctgg
tttcgctcccacactgctgcagaagtccgatggggtggtgccaaacatgaccctggtgag
aaggatgatgcaaggaagatgcacccaagatcttcattcaaggcttttcttgaggttgtc
aggacaaggagcttcccttggaaggattacgaaatggatgcaatccattctttgcagctt
atcctgaggaatgcattcaaagatatggacactttggattcaaacactgtgactgtcaat
acaaagctatctgacttaagaattgaagggatgcaagaacttgaagctgtgacaggcgag
atggtccgtttaattgaaacagccactgtgccaattttggctgtggatattgatgggctg
gttaacgggtggaacactaagatttctgacttgactggtcttccggttgagagagcaatt
gggaagcatttactgactcttgtggaagattcatcaactgatgttgtcaaatcaatgtta
gacttggcattggaaggcaaagaggaaaggaacattcaatttgagatcaaaacttatggt
tctaggaatgactctggtcccatcagcttggtagtgaatgcttgtgcaagtagggacctt
catggaaatgttgtcggggtgtgttttgtggcccaagatctaactgctcataagactatt
ttggacaagttcactcgaatcgaaggtgattacaaggcaattgtacaaaaccggaaccca
ttgatacccccaatttttggtagtgatgaatttggctggtgttctgagtggaatccagca
atgacaaagataactggttggaaacgagaagaggtcattgataaaatgcttatgggagag
gttttcgggataaacatggcatgttgccgtctcaaaaatcaagaggccttcataaatctt
ggcgttgtgttgaataatgccatgacaggtcaagaatctgaaaagattccttttgggttt
ttggcccggaatgggaaatacgtagaatgcctgctttgtgtgagtaagaaattagacagg
gagggttcagtcactggggtcttttgcttcttgcagcttgctagcctagaactgcagcaa
gcacttcatgtccagcgcttaatggagcaaactgctgtgaagagattgaaagcattagca
tatatgaagagacagatccgcaatccattggctggaataatattttcaaggaaattgatg
gaaagtactgagttgggaggtgaccaaaaacagcttctgaatactagtgctcaatgccag
cggcagcttagcaagattcttgatgactctgatcttgacaccatcatagacggctattct
gatctggaaatggttgagttcactttgggtgaggtattggttgcctctatgagccaagtc
atgatgaaaagcaaagcaaagggaatcaccatagaacaaaatgcagcagaagagactatg
aatgataccttatatggtgacagtctcagacttcaacaagtcatatcagatttcttacta
atagcaattaactttacaccaagcggaggccagattgttatagttgcaaacctcagcaaa
gatcagctaggagagtctgttcatctcgtgcgtctcgactttagattgattcatacaggg
gtggggataccggaagcattgctgaaccagatgttcggaaacgaaggagatgtatctgaa
gagggcatcagcctgctgatcagtagaaaattggtgaagctgatgaatggagatgtgcag
tatctgaaagaagctggcaaatcaactttcatcatatctgttgagcttgctggagctcat
agtaaagcgaaggcttccaagtga
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