Cannabis sativa (hemp): 115719389
Help
Entry
115719389 CDS
T08987
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115719389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115719389
03009 Ribosome biogenesis [BR:
csav03009
]
115719389
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115719389
Spliceosome [BR:
csav03041
]
Complex A
U1 snRNP components
U1 related factors
115719389
Complex B
115719389
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
Pre-60S particles
Helicases
115719389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
ERCC3_RAD25_C
PRAI
DUF6506
Motif
Other DBs
NCBI-GeneID:
115719389
NCBI-ProteinID:
XP_030504279
UniProt:
A0AB40E9P7
LinkDB
All DBs
Position
2:complement(52827633..52833718)
Genome browser
AA seq
555 aa
AA seq
DB search
MSYVPPHLRNLISSTTTTTTTTSKSNTSPTLTLATDCTNLSYTSNSNSYSNGFRRSSSTL
SPLPDPVFPLWNPSQRVLTMSPDQVEEVRCRLNVDVTSAPDSEPAPAPIESFEDMCLHPS
IMKDIAYHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQHCLAQSPVRR
GDGPLALVLAPTRELAQQIEKEVKAFSKSLESFKTAIVVGGTNISDQRSELRAGVDIVVA
TPGRFIDHLQQGNSSLSRVSFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMP
VEIETLTQEYLSSPVQVKVGKVSSPTANVSQNLVKVPDSEKLDRLLALLVEESSHAERSG
HPFPLTIVFVERKTRCDEVAEALVAQGLQAVALHGGRSQNEREAALRNFRNGTTSILVAT
DVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMGQATSFYTDRDMFLVAQIKK
AIAEVESGNIVTFATGKVARRKEKEAAVAQKEARMALSKLSMMGPNSLNIEDKYRFMIAS
SNIKREGSADSAWDD
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacgtacctccacacttgaggaacttgatcagctcaaccaccaccaccacaacc
accacctccaaatccaatacctcaccaacactcaccctcgctactgattgcactaatctc
tcctacacctccaattccaattcctactccaatggcttccgccgctcctcctccactctt
tctcccttgcctgaccctgtttttcctctctggaatccctcccagcgagtcctcaccatg
agccccgaccaggttgaagaggttcgttgtcgactcaacgttgatgttacttctgccccc
gattcagagcctgcgcctgcaccaattgaatcttttgaagatatgtgtctgcaccctagt
ataatgaaggatatagcttatcatgaatataccaggccaacttctattcaggctcaagca
atgccagttgccctcagtggtcgggatttattgggttgtgctgaaactggtagtggtaaa
acagctgcatttgccattccaatgatacagcattgcttggctcagtctcccgttcgtcgt
ggtgatgggcctctagcgctggtattagctccaactagagagcttgctcaacaaattgag
aaggaggttaaggcttttagcaaatctctcgagtcatttaaaactgcaattgttgttggt
gggacaaatatatctgaccagaggtctgagctacgagctggagtggacatagttgttgct
actcctggacgatttatcgatcatttgcagcaaggaaatagttcactttcaagagtttca
tttgttgttctagatgaggctgacagaatgcttgacatggggtttgagcctcagataaga
gaagtgatgaggagtcttcctgaaaagcatcaaactttgttgtttagtgccaccatgccc
gtggagattgaaacactaacacaggaatacttatccagccctgtgcaagtgaaggtagga
aaagttagtagcccaacagcaaatgtatctcaaaatctggtgaaggttcctgacagtgag
aagcttgatcggcttctagctcttcttgtagaagaatcatctcatgctgaaagatctggt
catccttttcccttaactattgtctttgtggagaggaagacaagatgtgatgaagttgct
gaagctttggtagcacaaggtttacaagccgttgctcttcatggaggccgctcacagaat
gagagagaggctgctttacgcaattttaggaatggcactactagtattttggttgccaca
gatgttgcatctcgtggtttggatgtctcaggagttgctcatgttatcaatctagatctt
ccaaagagcatggaagattatgtacaccgaattggaaggacaggcagagcaggatcaatg
ggtcaagctacttcattttacactgatcgtgatatgttccttgttgcacaaataaagaaa
gcaatagcagaagtcgaatctggaaatattgttacatttgcgacagggaaggttgctaga
aggaaagagaaagaagctgcagtggctcaaaaagaagctaggatggctctttctaagctc
tcaatgatgggacccaattcattaaacatcgaggacaagtataggttcatgattgcttca
tcgaatatcaaaagagagggatcagctgatagtgcttgggatgattag
DBGET
integrated database retrieval system
