Cannabis sativa (hemp): 115719668
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Entry
115719668 CDS
T08987
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csav03009
]
115719668
04121 Ubiquitin system [BR:
csav04121
]
115719668
Enzymes [BR:
csav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115719668
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
115719668
Ubiquitin system [BR:
csav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115719668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
zf-rbx1
zf-ANAPC11
zf-C3HC4
FANCL_C
ParcG
zf-C3HC4_2
zf-RING_16
MMS19_N
zf-RING-like
HEAT_MROH2B_C
zf-RING_11
zf_RING_Vps8_fungal
RINGv
C1_1
IBR_1
Motif
Other DBs
NCBI-GeneID:
115719668
NCBI-ProteinID:
XP_060966601
LinkDB
All DBs
Position
2:54103736..54114681
Genome browser
AA seq
1906 aa
AA seq
DB search
MGRQKGEGARSKARPSSSSLAASLLPSGSTAAVGFGGYVGRSRLDSSLAGEDSASFQDID
SEVAVHLKRLARKDPTTKLKALSSLSELIKEKPGKDLVTVIPQWAFEYKRLLMDYNREVR
RATHDTMTNLVTAVGRDLAPHLKSLMGPWWLSQFDSVSEVAQAAKRSLQAAFPASEKRLD
ALIMCTEEILMYLEECLNLTPKDMTDKAAALDEVEEMHNQIISSSLLALATLLDVLVGVQ
LERSSSDTESVAAQPKNASKARLVATSFAEKLFAAHNCFSDFLKFQSAAIRSATYSVLRS
FVKNVPHIINNGNMKSVAGLILGAFQEKDPACHSSMWDMILLFSKRFPDSWTSINVQKTI
LNRFWHFLRKGCFGSQRTSYPALVLFLDYVPPKAVVGENFFLDFFQNCWAGGSLSNSSTA
DRLAFFAAFKECFLWTLHKASRYYDGADSIHHFRVTLIENVLVKILWQNYFSCIGSNEQQ
YLSKDSGFPLSKTLEASNVKCPITYLQDLKNCIIDILSGIFALEPNLLSGFCMEFQKNCL
GLFQLPLNIDPTIESFERVFQFIILIGQHASQKGETWPLAYVVGPMLAKSFPMIRSLDSP
EGVKLLSVAVSVFGPRQIVQELFVHNKEHSFSPDDRVDRSLEADKFIQIFKDTFVPWCLH
SHDRSTSARLDLLLSLLDKECFSEQWCAAIMYAINLEDSGTSSESLDSDQITILALLLEK
ARHGITKLKKDEDCRHWIAAEPEHWHSEPLESFTVALACSPLSYGTCNSRFLCAVLGGST
EGELTSFVSRKASILIFEEILKKLLSFIHESSFDWVRDAGSMITAWAINSGLESKSSAST
KEMSHFALQVLDGSFFCLKTLIKDSELVPGILGAVLVIDWEYSLRKSLDNVAENNETNIE
SKARLEFGDSVHAFCCKRNKQFRNGLDINNLQRLWSILIQCIRSSIYNECKLNTEIITSW
CCSWILGFLSCFCQGQLEEQVLLEKLLCENDTWPLWIVPDFSSPEQLAFRKASIHDSGHC
KFVSFIDKLSLKLGIDKVLTGYRKLALLSPGGTTLSSSEETIHEDVTVRSWLAAEILCTW
KWPGGSARDSFLPLLCAYAKNNTSPSKETLLDSIFIILLDGALVHGGCGGLNFVIPWPAL
NDEVEHIEEPFLRALVSFLSTLFKENIWETCNAIKLFELVVNKLYIGEAINMNCLRILPW
LVNVLLQPLCDSRSGEADRDAEHDSSWNNHIQGIIAGWVQKTILLPPLVMLETGQGVEDW
FQLVISSYPFVAIGGIQELSLGRVISQLERTLLLELFRKQRQGVGTSSISNMPPVVQLLL
SKLIVVSVGYCWKDFNDEDWEYVLFQLRRWIQSSVVLMEELAENVDENITNNFTLENMDD
DLKKLEQIALIPDSFPFDIAKNALLSFSLCCGPFGIKQLNDAENINPLGTERWDPIKDRI
LEGILRLFFCTGIAEAISSSYCDEAASVISSSRSEHLYFWELVASSVVNSSVNARDRAVK
SVECWGLSKGPISSLFAILFSSKPVPSLQFAAYVILSTEPVSNLAILEDITHLDGNINSE
EDSRPIDLSVETSVHLKKEIACMIEKYPYEVLEMDLMAQQRVNVFLAWSLLLSYLWSLPS
SSPARERLVQYIQSFATPVILDCIFQHIPVDLSISQNTKKKDVELPAGLSEAAIAATHAI
KTGSLLFSIESLWPVEPVKLASLAGALYGLMICVLPAYVREWFSCLRDRSTSSSIEYFTR
AWCSPSLIANELSQIKKNKFSDENFSVSVSKSANEAVATYTKEETGMDLVIRLPVSYPLR
PVDVDCTRSLGISDVKQRKWLMSMMSFVRNQNGALAEAIGIWKRNFDKEFEGVEECPICY
SVIHTANNSLPRLACKTCKHKFHSACLYKWFSTSHKSTCPLCQSPF
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atgggcaggcaaaaaggagaaggagcaagaagcaaggctcgcccttcaagcagcagtcta
gcggcatcgcttttgccgtcgggttctactgcagctgtgggatttggcggctatgtcggt
aggtctcgcctcgattcttctctcgctggcgaggattctgcttcctttcaggatatagat
agtgaagtggcagttcatttgaagaggcttgcgaggaaagatccgactacgaagcttaaa
gcattatcatctctatctgagttgatcaaggaaaagcctgggaaggacttagtgaccgta
attccacaatgggcatttgaatacaaaagactgttgatggactataacagggaagttagg
cgagcaactcatgacacaatgaccaaccttgtaactgctgtcggaagagacttggctcca
catctcaagtctttaatggggccatggtggttgtctcagttcgattcagtttctgaagtt
gcacaagctgcaaagaggtcattacaggcggcttttccagcatcggaaaaaagactagat
gctttaattatgtgcacagaagagattcttatgtatttggaagaatgtttaaatctcaca
ccaaaagacatgactgataaagctgctgccttggatgaagtagaagagatgcataatcag
ataatatcttcatcgttactggcattggctaccctccttgatgtcttggttggtgttcaa
ttagaaaggtcaagttctgacactgagagtgtggctgctcaaccaaagaatgcttcaaaa
gctaggctggttgctacctcctttgctgagaagttgtttgctgctcataattgtttctcg
gacttcctaaaatttcagagtgctgcaattcgttcagctacatattcagtgttaaggagt
ttcgtaaaaaatgttcctcatattattaataatggcaatatgaaatctgttgctggatta
atactaggtgcctttcaggagaaggatcctgcttgtcattcatcaatgtgggatatgatt
ttgctgttctcgaaaagatttcctgatagttggacatcaataaatgtccagaaaactatt
ctaaatcgtttttggcattttcttagaaaggggtgctttggatcccagcggacttcttat
ccagctttggttttattcttagactatgtgccaccaaaagctgtagttggggagaatttt
tttcttgacttttttcagaactgctgggcaggaggaagcctttccaattcatcaactgca
gatagattagcattttttgcagcatttaaggagtgttttctctggacattgcataaagct
tccaggtattatgacggagcggattcaattcatcattttcgagtcacacttattgagaat
gttttggtaaagattttgtggcagaactacttttcttgcattggttcaaatgagcaacag
tatttatctaaggatagtggttttcccttgagcaagactttagaagcatccaatgttaag
tgtcccattacttacttgcaagacttgaagaactgcataattgacatcctctcgggtatc
tttgccttggagcccaatttgctctctggcttttgtatggaatttcagaaaaattgtttg
ggtttatttcaactccctttgaacatagatccaacaattgaaagttttgaacgggtcttt
caatttattattttaataggacaacatgcttcacagaaaggtgaaacttggcctctggct
tatgtagtgggaccaatgttggccaaatcctttccaatgataagatcacttgactcacca
gaaggtgtgaaacttctctcagttgccgtttctgtatttggtccacgccagattgtgcaa
gaactttttgttcacaataaagagcattcctttagtcctgatgatcgggtagatagaagt
ttggaggctgataaatttatacaaatattcaaggatacttttgttccctggtgtttgcac
agtcatgataggtcaacaagtgctcgacttgatctattgctttctttgcttgacaaggaa
tgcttttctgagcagtggtgtgctgctatcatgtatgctattaacctagaagattctgga
acttcatctgagtctctagattcggaccaaataaccattttggcactacttctggagaaa
gcaagacatggaattacaaaactgaagaaggatgaagactgcagacactggatagctgca
gagccagagcactggcactctgagcctctagaatcatttactgttgctttagcatgttcc
ccattgtcctacgggacatgtaattctcgatttctgtgtgctgttctaggtggttcaact
gaaggcgagcttacttcttttgtatctagaaaggcatcaatcctgatttttgaggaaatt
ttgaagaagttactttcttttatccatgagtcatcatttgattgggttagagatgccggc
tccatgataactgcttgggcaatcaattctgggttagaatctaagagttctgctagcaca
aaagagatgtctcattttgctcttcaagtacttgatggtagttttttttgcttgaagaca
ctcattaaggatagtgagttagtgccaggaattttaggtgcagttttagttattgattgg
gagtatagcttgagaaagtcattggataacgttgctgagaataatgaaactaacatagaa
tctaaggccaggcttgaatttggtgattctgttcatgccttttgctgtaagagaaataag
caatttcggaatggtcttgacataaacaatctacaaagattatggagtatcctgattcaa
tgcattagatcctccatctataatgaatgtaaattaaacacagagattatcacttcttgg
tgctgctcatggatactaggctttttaagttgtttctgtcaaggtcagttggaagaacaa
gtactgttagaaaagcttctgtgtgagaatgatacgtggcctttgtggatcgttcctgat
tttagcagcccagagcaattagctttcagaaaagcatctattcatgactcaggtcattgc
aagtttgtttcctttattgacaagctttcattgaaacttgggattgataaggttcttact
ggctatagaaagcttgcactcttgtcgccaggagggacaacactctcttcctcagaagag
acaatacatgaagacgttactgttcgatcctggcttgctgctgaaatattgtgcacgtgg
aaatggcctggaggcagtgctcgagactctttcttacctttactctgtgcatatgccaag
aataacacttctccttcaaaggagaccttgttagactccattttcatcattttacttgat
ggtgctcttgttcatggaggctgtggcggactgaattttgtcattccatggcctgcttta
aatgatgaagtagagcatattgaagaaccttttctgagagctcttgtatctttcctttca
actttgtttaaggaaaatatatgggaaacatgcaacgctatcaagctgtttgaactggtt
gttaataagctttatattggtgaagcaataaatatgaactgtctgaggattcttccttgg
cttgttaacgttttacttcagccactgtgtgatagcagatctggtgaagctgatagagat
gctgaacatgattcttcatggaataatcacatccaaggcatcattgctggttgggtccaa
aaaactattctgctcccacctctggtcatgttggaaacagggcaaggtgtggaagattgg
tttcagttggttataagcagttatccttttgttgcaatcgggggcatacaagaattgagt
ctggggagagttatcagtcaattggagaggactcttttacttgaattgtttcgcaaacag
agacaaggtgttggcacatcaagtatatctaatatgccaccggtggtacagctgctgcta
tcaaaactaatagtagtttcagttggttactgttggaaagattttaatgacgaagactgg
gagtatgttttatttcaattaaggcgttggattcaatcatctgtggttcttatggaagaa
cttgctgagaatgtggatgaaaatattactaacaactttactttagagaacatggatgac
gatcttaaaaagcttgagcaaattgctttaattcccgactcttttccttttgatattgct
aaaaatgcccttttatctttttctctatgttgcggaccttttggaattaagcaattaaat
gatgcagaaaatataaatcctcttggaacagaaagatgggaccccatcaaggatcggatt
ctagaaggtattctacgtttgttcttctgcacaggcattgcagaagctattagtagttcc
tactgcgatgaagctgcatctgtcatatcttcatctcgatctgagcacctctatttctgg
gagttagtggcctcgagtgtagttaactcttcagtaaatgctagagatagagcagtgaag
tcggtagaatgttggggcttgagcaaagggccgatcagctctttatttgccatccttttt
tcttccaaaccagttccttcattgcagtttgctgcttacgttattctttcaactgaacct
gtttcaaacctggctattttggaagacatcactcacttagatggtaatattaacagtgaa
gaggattcacgcccgattgatctgtcagtggaaacaagcgtccatttgaaaaaggaaata
gcttgcatgattgaaaagtatccttacgaggtccttgaaatggacttgatggcacaacaa
cgggtaaatgtattccttgcatggtctttgttgctttcgtatttatggtcattaccatca
tcatcacctgcaagagaaagactagttcagtatatacaaagttttgctactccagttata
ttagattgcatcttccagcatatacctgtagatctttcaatttcacaaaatactaagaag
aaagatgtagagcttcctgcagggctatcagaagctgcaatcgcagcaacccatgccatc
aaaactggctcattattgttttccatagagtctctttggcctgttgaaccagtgaaattg
gcatcacttgctggagcattatatggtttaatgatctgtgttcttcctgcttatgttaga
gaatggtttagttgtttgcgtgatcgatctacgtcatcttcaattgaatatttcaccagg
gcatggtgtagtccaagtcttatagcgaacgagctgtcacagataaagaaaaataaattt
tcagatgagaatttttcagttagtgtaagcaaatcagcaaatgaggctgtcgctacctat
acaaaggaggagacaggaatggacctagttatccggcttcctgtttcttacccattacga
cctgtagatgttgattgtacaaggagcctaggaattagtgatgtaaagcagagaaagtgg
ttaatgtctatgatgtcttttgttcgcaatcagaatggagctttggctgaagctattggg
atatggaagcggaattttgacaaggaatttgaaggtgttgaagagtgccctatatgttac
agtgttattcatactgcaaacaacagccttcctcgtcttgcttgcaaaacttgcaagcat
aaattccattcagcttgtctttacaagtggttctcaacctctcataaatcaacctgccca
ttgtgccagtctcccttttaa
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