KEGG   Cannabis sativa (hemp): 115719674
Entry
115719674         CDS       T08987                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03030  DNA replication
csav03410  Base excision repair
csav03420  Nucleotide excision repair
csav03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    115719674
   03410 Base excision repair
    115719674
   03420 Nucleotide excision repair
    115719674
   03430 Mismatch repair
    115719674
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csav03032]
    115719674
   03400 DNA repair and recombination proteins [BR:csav03400]
    115719674
Enzymes [BR:csav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     115719674
    6.5.1.6  DNA ligase (ATP or NAD+)
     115719674
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     115719674
DNA replication proteins [BR:csav03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    115719674
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     115719674
DNA repair and recombination proteins [BR:csav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     115719674
   NER (nucleotide excision repair)
    Other NER factors
     115719674
   MMR (mismatch excision repair)
    Other MMR factors
     115719674
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PDCD9
Other DBs
NCBI-GeneID: 115719674
NCBI-ProteinID: XP_030504664
LinkDB
Position
2:complement(77865160..77880279)
AA seq 795 aa
MLKLGSCYCLRLAPISLPHLSLFISKSFSFTPITLFHNPKLSPSVMSSRPSAFDALMSGA
RAAAAKKKSSESSVSEPKKRKTPDSERSSKPDSSLSEDKALSLTAASENGHDTENAIVKQ
EVAATEEPSEVAATKKVCTATSGASVQTRVAELKAKYEQLKTKAVDFDPKSIACWKEGER
IPFLFLCLAFDLIANESGRIVITDIACNMLRTVMHTTPEDLVPVVYLAANRIAPAHEGLE
LGIGDASIIKALSEACGRTETQVKKQYKELGDLGLVAKASRSSQSMMRKPDPLTVTKVFD
TFRLIAKESGKDSQEKKKNRIKALLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQA
AVYSKQHSTPKNIHSPLEEAIKIVKQVYSVLPVYDKIIPALLGDGVWNLPKTCNFTPGIP
VGPMLAKPTKGVFEIVQKFQNTEYTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFP
DVVVAVSRLKKSSVKSFVLDCELVAYDREKQKILPFQILSTRARKNVVTSEIKVNVCIFA
FDMLYLNGRPLIQEELKVRRECLYESFEEEAGFLKFATSITSNDIDEIQKFLDAAVDGCC
EGLIIKTMNKDATYEPSRRSLNWLKLKKDYLDSIGDSLDLVPIAAFHGRGKRTGVYGAFL
IACYDTSNEEFQSICKIGTGFSEAMLEERSASLRSKVIERPKSYYRYAESINPDVWFEPF
EVWEVKAADLTISPVHRAAIGIVDSDKGISLRFPRLIRIREDKKPEEASSSEQVAEMYNS
QSHNQSNNQDENEDD
NT seq 2388 nt   +upstreamnt  +downstreamnt
atgctcaaactcggttcatgctactgtcttcgcctagctccaatctctctccctcatctc
tctctcttcatctccaaatcattctcctttactcccataaccctcttccacaaccctaaa
ctctctccctctgtcatgtcctctcgcccctccgcttttgacgctctcatgtccggcgca
cgcgctgccgccgccaagaagaagtcctcagagtcttctgtttcagaacccaagaaacgg
aagactcccgactcagaacgctcctccaaacctgattcttccctatcggaagacaaggcc
ctctcccttactgctgcatccgaaaatggccacgatactgagaatgccatcgtgaagcag
gaggtggcagcgaccgaggagccgtccgaggtcgcagctactaagaaagtttgtacagcc
acctctggtgcgagtgttcaaacgagggttgcagagttaaaggctaaatatgaacaactg
aaaacgaaggctgtggatttcgaccccaaatcgattgcttgttggaaggagggagagagg
attccttttttgtttctttgtttggcttttgatttgattgcgaacgagtcgggtcggatt
gtgattacggatattgcatgcaatatgttgaggacggtaatgcataccacgcctgaagat
ttggtgcctgtggtttatcttgcggcgaatcggattgctcctgcccacgaggggctcgag
cttggaattggggatgcttcgattattaaggcgctgtctgaagcttgtgggaggactgaa
acgcaggttaagaagcaatacaaggagttgggagatttaggtcttgttgcaaaggcaagc
cgttcttcccagtctatgatgcggaagcctgatccattgactgttaccaaggtttttgat
acatttcgtctcattgcaaaggaatctgggaaggatagtcaagagaagaaaaagaaccgt
atcaaggcacttcttgttgctgccactgattgtgaacctctatatttgatccgattgctt
caggcaaagttgcgaattgggttggcagagcagacacttttagctgctttaggacaagct
gcagtatatagtaaacaacactctactccaaaaaatatacattctcctttagaggaggct
ataaagattgttaaacaagtgtactctgtacttcctgtttatgataaaattattcctgcc
cttttgggtgatggtgtatggaatcttccaaagacttgtaactttactcctggtattcca
gttggccctatgttagctaaaccaactaaaggggtttttgagatagtacaaaaatttcag
aacacagaatatacatgcgagtacaagtatgatggagaacgagcacagatacattacttg
gaggatggttcggttgagatatatagtcgaaatgcagaacggaatactggaaaatttcct
gatgttgttgtcgcagtttcaaggttaaagaagtcatctgtaaaatcatttgttttggat
tgtgaactggttgcttatgaccgtgaaaaacagaaaatacttccctttcagatactcagc
actcgagctcgaaaaaatgtggttacaagtgagatcaaggtcaatgtttgtatatttgcg
tttgatatgttgtatcttaatggccgaccacttattcaggaagaacttaaagttcgaaga
gagtgtctttacgagtcttttgaagaagaagctggtttcctaaagtttgctacgtcaata
acttcaaacgatattgatgaaatacagaagttccttgatgctgctgttgatggctgttgc
gagggtctaattatcaaaacaatgaataaagatgctacatatgagccatccaggcggtct
cttaactggctcaaattgaagaaagattatttagatagtattggggattcactggatttg
gtacccatagccgctttccatggacgtggaaaacgtacaggtgtctatggtgcctttctc
attgcttgttatgacactagtaatgaagagttccagagcatttgtaaaattggcactgga
ttttctgaagcaatgcttgaagagcgctctgctagtctccgttctaaagttatagaaaga
ccaaagtcatattatcgatatgcggagagcattaatccagatgtttggtttgaacctttt
gaggtctgggaggttaaagctgcagacttgactattagccctgtccatcgtgctgctatt
ggcatcgtagattctgataagggcatttcacttcgattcccacgacttatccgcattcga
gaggacaagaagccagaggaggcctcatcatctgagcaggttgctgaaatgtacaactct
caaagtcacaatcagtccaacaatcaagatgagaatgaagatgattga

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