Cannabis sativa (hemp): 115720806
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Entry
115720806 CDS
T08987
Name
(RefSeq) plant-specific TFIIB-related protein PTF2 isoform X1
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115720806
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
115720806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_Ribbon_TF
BRF2-like_C_cyclin_rpt
TFIIB
AKAP28
Motif
Other DBs
NCBI-GeneID:
115720806
NCBI-ProteinID:
XP_030505841
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Position
2:complement(3264963..3267328)
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AA seq
539 aa
AA seq
DB search
MSGSCANCKSKSLVRDFDSESLVCESCGFVQEFDNFQDNFGGINGPQGTFVRVGTAGTGS
VFHYKDKKIFEAQKLIDDILHRLGLGSKAYEIKTMVSSITEGEYGVGDWFGVFVGACAYV
VMRKDKRSLPMPMAEVSSVVGCDEFELGKMVSRVVKFLNLKRPEYPEFNVLSSFERALQN
SHIFGNIGDETRERIRRQGIFLIQCMVKWSLTTGRRPVAVVAAVLVFLGELNQIENVRIE
NVAKEVHATVCTSKLRYKELMEALVKVAQALPWGKNVNIKNIVNNAPFVIQYMEHKSMSK
SDEKRNDLERLRFELEDVVSECLSKDVDYENDMVNVDDGIDYFKVDLDSNKGLPSIDDME
KFQLSSECLMMIYEKFSNEVGCKKSSRESGSVVHRRENRNFDIGVCTEWWSGESELSKKL
LLKQILEKDVGLNALPPSFVNNCKVYEKRREKINAAKRRIDRIMFPSNSDDCVNNYVVDC
EQLGKKRKRAKFSAIDWEDLIIEMLLLHQVKEEEIEKGHYNTLMDLYVFNSGIVPDFPA
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggttcctgcgccaattgcaagtccaaatccttagtccgcgacttcgactcagaa
agcctggtatgcgaatcatgcggcttcgtccaagaattcgacaatttccaggataacttc
ggaggcattaacggtccccaagggaccttcgtccgcgtcggaaccgcaggtacaggcagc
gtttttcattataaggataagaaaatttttgaggctcagaaactaattgatgatatattg
cataggttagggttgggttcgaaagcttacgagattaaaactatggtcagttccattacg
gaaggtgagtatggcgttggtgattggtttggggtttttgttggtgcttgtgcttatgtt
gttatgaggaaagataagcgatctttgccgatgccaatggctgaggtttcttcggttgtt
ggttgtgatgagtttgaattggggaaaatggtttctcgtgtggtgaagtttctaaatttg
aagagaccagagtaccctgaattcaatgtgcttagttctttcgaaagggcattgcaaaat
tcccatatttttggaaacattggggatgagacgagggagagaatccggcgacaagggatc
tttttgatacaatgtatggttaaatggtctctcaccacagggaggcgaccggttgcggtg
gtggctgcggttttggttttcttgggcgagttgaatcaaattgagaatgttaggattgag
aatgtggctaaagaagttcatgctaccgtttgcacgagcaaattaaggtataaggaactg
atggaagcacttgttaaggtggctcaagcattgccttgggggaagaatgttaacattaag
aacattgtgaataatgctccttttgtgattcagtatatggagcataagtctatgtcgaaa
tcggatgagaagaggaacgatttggagcggttgcggtttgaattggaagatgtggttagt
gagtgtttgagcaaagatgttgactatgagaatgatatggttaatgtggatgatggtatt
gattatttcaaggtagacttggatagcaacaagggtttgccaagtattgacgatatggag
aagtttcaactttcgtccgaatgcttaatgatgatttatgaaaagttttctaatgaagtg
ggctgtaaaaaatcttctagagagagcggaagtgtggttcatagaagagaaaacaggaat
tttgacattggtgtttgcacagagtggtggagtggagagtcagagttgagcaaaaagctt
ttactcaagcaaatattggagaaagatgttgggttgaatgccttgcctccatcgtttgtt
aataattgcaaggtttatgagaagaggagagaaaagattaatgctgctaagcgacgcatt
gatcgaattatgtttccatcgaattcagatgattgtgttaacaattatgttgtggactgt
gaacagcttggaaagaagaggaagagagcaaaatttagtgccattgattgggaagatttg
attattgagatgctccttcttcatcaagtgaaagaagaggaaatagagaagggtcattat
aacactttaatggacttgtatgtgtttaactctggaattgttccggatttccctgcttga
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