Cannabis sativa (hemp): 115721031
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Entry
115721031 CDS
T08987
Name
(RefSeq) LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 20
KO
K10779
transcriptional regulator ATRX
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csav03000
]
115721031
03036 Chromosome and associated proteins [BR:
csav03036
]
115721031
Transcription factors [BR:
csav03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
115721031
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
115721031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Helicase_C_2
CTD2
NorB_cytochrome_c-like
Motif
Other DBs
NCBI-GeneID:
115721031
NCBI-ProteinID:
XP_030506121
LinkDB
All DBs
Position
2:25838134..25857987
Genome browser
AA seq
1477 aa
AA seq
DB search
MEENHEEVEDVESSASDSFIDDSEDDGPSTSGRNDDELHPEEPLAEEEIEDLFAEFLEVE
SKAAEAQETLEKESLAKVESEVRDELAQTLHGDDLETAVADEMATFIEEWEAVLDELETE
SSHLLEQLDGAGIELPSIFKWIESQAPNNCGNEAWRRRIHWTGSQATGDFTESKAHAEEF
LQTHRPVRRRHGKLLEEGASGFLQKKLAXDGSKETVTRKFEVDWCYVNKLFSDGVSEDCG
SFGDKHWASVYLASTPQQAAEMGLKFPGVDEVEEIDDIDGNSTDPFVAAAVANEKDLALS
EEQKKNFRKVKEEDDADIDRKLQNHLKRRRYQKRSKQKTTEDCETLHSNESGTACQSLKN
DFPEGFETSDGDRGCSTSNGLSAIPSEYVLRDSAKXRGSKHFIETEELDIENKRRRTVVL
DGDDEFRVKGSVFGTVEVEDQSIXRILLGRICCDALSSQNLNDKFHCTACNEIAIEVHPH
PLLKVIICADCRSIMEEKMKSKDPDCSECYCGWCGKSIDLVNCKSCKNLFCTTCIKRNIG
AECLSEVQMSSWQCCCCRPGLLXEVNIGIRRALGNGKIVDSSCESDSDNSDADHLNVSVS
TKRKRKKKIRRILDDAELGEETKRKIAIEKERQERPKSFHERFFGKSNVMSSVGFNGNLS
XDASTGVLGDASTGYIVNVVREKGEEAVEFPQAFXGKLKVHRITGIRFLWENIIQSVTRV
KSGDKGLGCILAHTMGLGKTLQVIAFLYTAMRSVDLGLRTALIVVPVNVLHNWRQEFLKW
RPSEVKPLRVFMLEDVSRERRGELLAKWRAKGGVFLIGYSAFRNLSFGKNVKDRNMAREI
CYALQDGPDILVCDEAHVIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV
REGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYQQLKGFVQRMDMNVAAK
DLPPKTVFVIAVKLSPLQRQLYKRFLDVHGFASDRVSTEKIRKRSFFAGYQALAQIWNHP
GILQLKKDDKDSVRREDAVRREDAVDNFLADESSSDENIDYNMVFEEKQKNSNVVTPGKN
DDGFFLKDWWKDFLHETSYKELNYSGKMVILLDIISMCSDVGDKALVFSQSIPTLDLIER
YLSKLPRQGKKGKFWKKGKDWYRLDGRTESSDRQKLVESFNDPVNKRVKCTLISTRAGSL
GINLHAANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK
EGLAARVVDRQQVHRTISKEEMLHLFDFGDDDNLDNLTNLDEENEQVNKDTTGAQASKFP
KQKVTASHGSCSSDKLMERLLGKHSPRWIANYHEHETLLQENEDERLSKEEQDMAWEVFQ
RTLEWEEVQRVPLNDTTPAEQRPAAPNDVQDEREPDLGSSLTQSNMRKRSVPRKCTKLAH
LLTLRSQGTKVGCSTVCGECAQEISWEILNRDSKPAK
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaatcatgaggaggtagaagatgttgagtcttcggctagtgattctttcatt
gacgactcggaagatgatgggccctctacgtctgggagaaatgatgatgaattgcatccc
gaggaaccattagctgaggaagaaatagaggatctttttgctgagtttttggaggttgag
agtaaggctgcagaggctcaagaaacacttgagaaggagtctcttgccaaagtagagagt
gaagtcagggatgaactagcacagactcttcatggtgatgatttggaaacggctgttgca
gatgaaatggctacttttatagaagagtgggaagctgtgctagacgagctggagacagag
agttctcatttgttggaacaacttgatggggctggcattgaactaccaagcatttttaag
tggattgaaagtcaggctcctaataattgcggcaacgaggcttggagaagacgaatacat
tggacaggatctcaggcgactggtgatttcaccgagtcaaaagctcacgctgaggagttc
ttgcaaacccacagacctgtaagaagacgacatggtaaactattggaggagggtgctagt
ggatttttgcaaaagaaactagctngagatggaagtaaggaaaccgtaacgagaaaattc
gaagtcgattggtgttacgtgaacaaattattttcggatggggtctcggaagattgtggt
tcatttggcgataagcattgggcttctgtttacttggccagtacgccgcagcaggctgca
gaaatgggtctcaaatttcctggtgtcgacgaggtggaggaaattgatgacattgatggc
aattcaactgatccatttgttgctgctgctgttgcaaatgaaaaagatcttgctctttct
gaagaacaaaagaaaaattttaggaaggttaaagaagaagatgatgcagatattgatcgg
aagcttcaaaatcatttgaaacggaggagatatcaaaagagatctaaacagaaaactaca
gaagattgtgaaactctgcatagcaatgagagtggaactgcatgccagagtttgaagaat
gattttccagaaggttttgaaacttcagatggtgacaggggatgctcaacaagtaatggc
ctgtctgcaataccttccgagtacgtgctacgtgattctgcgaagngtagagggtccaaa
cattttattgagaccgaggaactggatattgagaataagagaaggcgaactgttgtatta
gacggtgatgatgaatttcgggtgaagggttcggttttcggtacggttgaggtagaggat
caatcgatttaaaggatacttcttgggagaatctgctgtgatgctctttcttcccagaat
ctgaatgacaagttccactgtacagcttgtaatgagattgctattgaggtgcatccacat
ccacttctgaaagtgattatttgtgctgattgcagatccataatggaagagaagatgaaa
tcaaaggatcctgattgctctgagtgttattgtggatggtgtggaaagagcattgacttg
gtaaattgtaaatcatgtaagaatttattctgcacgacttgtataaaaaggaatattggt
gctgagtgcttgtctgaggtccagatgtccagttggcaatgttgctgttgtcgtccaggt
cttcttnncgaagttaacattggaattagacgagcattgggaaatggaaaaattgttgat
tctagctgcgaaagtgattctgataattctgatgcagatcatttaaatgtttctgtcagt
accaagaggaagcggaaaaagaaaattcggaggatccttgatgatgctgaattgggagaa
gagaccaaaagaaaaatagcaattgaaaaggaacgtcaagagcgtccgaagtctttccat
gaacggtttttcggcaaatctaatgttatgagctcggtaggatttaatggaaatttgtcg
naagatgctagcaccggtgtgcttggtgatgcatcaacgggttatattgtgaatgttgtg
agggagaaaggtgaagaagccgtcgagttcccccaagcatttnncgggaaattgaaagtt
catcggataaccgggatcagatttttgtgggaaaatatcatacagtctgtcacaagagtg
aaatcaggtgataaaggtcttggttgcattctagctcatacgatgggtctgggtaaaact
cttcaggtcatagcttttttgtacacggcaatgagaagtgttgatttgggattaagaact
gcacttatagttgtgcctgtcaatgtcttgcataattggcggcaagagttcttgaagtgg
aggccttctgaagtgaagccattgcgtgtcttcatgctagaagatgtatcgagggagaga
agaggagaattgcttgctaagtggagagccaaaggtggtgtcttcctcataggctattct
gcttttcggaacttatcatttggaaagaatgtgaaggaccggaacatggctagggaaatt
tgttatgccttgcaggatggacctgatatactcgtttgcgatgaggcccatgtaataaaa
aatactaaagctgatgtaacccaagctttgaaacaagtaaaatgtcaacgaaggatagca
ttaactggatcacctctacagaacaatctcatggaatattattgtatggttgattttgtg
agagagggttttcttggaagcagtcacgagtttcggaatcgcttccaaaatcctatagaa
aatggtcaacatactaattcaactctggatgacgtgaaaatcatgaatcagaggtctcat
atcctctatcagcagttaaaaggctttgtccaaagaatggacatgaacgtggctgcaaag
gacttaccacctaaaactgtttttgtcatagctgtcaagctttctcccttgcagagacaa
ttatacaagagattcctggatgtgcatggatttgccagtgacagggtctctactgaaaag
attaggaagaggagtttttttgcagggtaccaggccttagcacagatatggaaccaccct
ggaatcttgcagttgaaaaaggatgacaaagattcagttagacgtgaagatgcagttaga
cgtgaagatgcagttgataattttcttgcagatgagagctctagtgatgaaaacattgac
tataatatggtttttgaagaaaagcagaagaattcaaatgtggtaacacctggaaaaaat
gatgatggttttttcttaaaggattggtggaaagattttctccatgaaactagctataaa
gagcttaattacagtggaaaaatggtaattctgctagacattatatccatgtgttctgat
gtgggtgataaggcattggttttcagccaaagcataccaacacttgacttgatagaacgt
tatttgtcaaaactacctcggcaagggaagaaagggaaattttggaagaagggaaaagac
tggtataggctagatggaagaacagagagctcggacagacagaagctggttgagagtttt
aatgatcccgttaacaagcgggtgaaatgcactttgatttcaaccagagcaggatcttta
gggattaatcttcatgctgctaaccgtgtaatcatagtcgatggttcttggaatccgaca
tatgaccttcaggccatatatcgagcttggaggtatggccaaacaaagccagtgtttgct
tacagattgatggcacatggaactatggaggaaaaaatttacaagcgtcaggtaacaaag
gagggtctggctgcaagggtggtagatagacaacaagtgcatagaacaatttcaaaggaa
gagatgttacatctttttgactttggagatgatgacaatcttgacaacttgactaatctc
gatgaagagaatgagcaagtaaataaagatactacgggtgcacaggcttccaagtttccc
aaacagaaagtgactgcttctcatggaagttgctcttctgacaagctaatggaaagacta
cttggcaagcatagtccacgctggattgcgaattaccatgaacacgaaacacttttacaa
gagaacgaggatgagagactttcaaaggaagagcaagacatggcttgggaagtattccag
agaacattagaatgggaggaagtacaacgagttcctctcaatgacactacaccagcagag
caaaggccagccgcaccaaatgatgttcaggatgaacgggagcctgatttgggtagcagc
ctcacacaatcaaacatgaggaagcgtagtgtgccacggaaatgcactaaacttgctcat
ttgcttacactaagaagtcagggaaccaaagttggttgcagtactgtttgtggggagtgt
gcccaggagatcagttgggagattttgaatcgcgattccaaaccagcaaagtga
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integrated database retrieval system
