Cannabis sativa (hemp): 115721363
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Entry
115721363 CDS
T08987
Name
(RefSeq) uncharacterized protein LOC115721363
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115721363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115721363
03400 DNA repair and recombination proteins [BR:
csav03400
]
115721363
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115721363
Messenger RNA biogenesis [BR:
csav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
115721363
DNA repair and recombination proteins [BR:
csav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
115721363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Cas3-like_C_2
Hjc
Motif
Other DBs
NCBI-GeneID:
115721363
NCBI-ProteinID:
XP_030506508
LinkDB
All DBs
Position
2:complement(52213041..52220517)
Genome browser
AA seq
882 aa
AA seq
DB search
MSLLPASKPIFSTSKLRTTMESILKNYFGYSSFRPYQKEVIENILEKKDCMVVMATGSGK
SLCYQVPPLIAGKTGIVVSPLISLMQDQVMALKERGIKAEFLGSAQTDQSVQKKAENGHF
NILYMTPEKACLIPSSFWSNLLNVGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGILVN
VPFVALTATATEKVRNDIINSLKMKDPVVSIGSFDRHNLFYGVKLFNRGQSSVDELVKEI
AKYVASAGSTIIYCTTVKDVEQIFKSLQDVGIKAGIYHGQMNNKARAESHRLFIRDELHV
MVATIAFGMGIDKPDIRQVIHYGCPKSLECYYQESGRCGRDGVPSICWLYYTRSDFAKGD
FYTAESHTATQRKAVMESLMAAQRYCLLTTCRRTFLLKHFGENYPADNCGNCDNCLSSKN
ERDMSREAFLLLACIRSCKGRWGLNMPVDILRGSRAKKILDAQFDRLPLHGLGKDYSANW
WKALAHQLISNDYLTETVTDVFKTIRVSPKGEQFLSSATPDYQPPLVLSVTSEMMDDEEN
KSVAGNGEIKSLGTLESEGFSETEAKFYHMLLEERMKLAKELGTAPYAICGDQTMKRIAL
TRPSTRARLANIDGVNQHLVTKHGDRFLQVIQQLSHRLSLSLDGEANLQTAITRKVYPVS
DQQGVSNQQRKLTPAKFEAWKMWMEDGLKIEKIANFPGRSAPIKEQTVIDYILDAAREGL
AMDWMRFCQEIGLTHEVLSDIQSAILKVGSKEKLKPIKNELPEDVSYSHIKVCLTMQEIG
VSPSDTMSNCHKKPADLPIDSDEDPVSKKRQRVVEPAEGISTPPEATEDSVLDWIKNFKD
GVTLSDIVKHFNGSQEESINELICSLEAEFLIYKKNNVYKIM
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttcttcccgcctcaaaacccatcttttcaacctccaaactcagaacaacaatg
gaatccatactcaaaaattactttggttattcttcctttcggccgtaccagaaggaagtg
atcgagaatattctagaaaaaaaggactgtatggtggtcatggcaaccggaagtggcaag
tccttatgttatcaggtacctcccttgattgctggaaagactggaattgtagtgagtcct
cttatatctttgatgcaagatcaagtgatggctttgaaagaacggggcattaaagctgag
ttccttggaagtgctcagactgatcaatctgtccagaagaaagccgagaatggtcatttc
aatatcttatatatgactcctgaaaaggcatgcttgattcctagcagcttctggtcaaat
ttgcttaatgtgggaatttgtttgttcgctgttgatgaggctcattgtatatcagagtgg
gggcatgatttcagggtggaatacaagcagttagacaagttgcggggtattcttgtgaac
gttccatttgttgccctaactgcaactgctactgaaaaggttcgaaatgatatcattaac
tctctaaagatgaaagaccctgttgtctctataggctcatttgacaggcacaatctcttc
tatggtgtcaagttatttaatcgcggtcaatcatctgtagatgagcttgttaaagaaatt
gcaaaatatgtagctagtgctggttcaaccattatttattgcacgacagttaaggatgtt
gagcagatattcaagtcacttcaggatgtgggtatcaaggctggaatttatcatggacaa
atgaataataaagctcgtgctgagtcccacagattatttataagagacgaattgcatgtc
atggttgctactattgcttttggtatgggaatagataagccggacattagacaagtaatt
cattatggttgtcccaaaagtctagaatgctactaccaggaaagtggtcgttgtgggaga
gatggtgtgccatctatctgctggctttactacacaagaagtgattttgcaaaaggagac
ttctatacagctgaatcgcacacagcaactcagcgaaaagctgtcatggagtcactgatg
gctgcacaacgctattgtttgttgactacatgcagaagaacgttcttgcttaaacatttt
ggggagaattatccggccgataactgtggaaattgtgataattgccttagttcaaagaat
gagcgtgacatgtccagagaagcattccttctactggcctgtattcgatcgtgcaagggg
agatggggcttgaatatgcctgttgacattctccgtggttctcgtgcaaaaaagattttg
gatgctcagtttgacaggcttccacttcatggccttggcaaggattattctgcaaattgg
tggaaagctctagctcatcagttaatttctaacgattatttgacggaaactgtaactgat
gtgttcaaaactataagagtgagtccaaaaggggaacagtttcttagttctgccacacct
gattatcaaccacccctggttctgtcagtgaccagtgaaatgatggacgatgaggaaaat
aaaagcgttgctggcaatggagaaattaaaagtttgggtactttggagagtgaaggattt
tctgagactgaggcaaaattttaccacatgcttttagaagaaagaatgaaacttgcgaag
gagcttggaacagctccatatgccatatgtggcgaccagacaatgaaaagaattgcattg
actcgaccatctacgagagcacgcttagcaaacatcgacggtgtcaaccagcacttggta
acgaaacacggagatcgttttcttcaagttattcagcagctatcacaccgtcttagcctt
tccttggatggagaagcaaacttacaaactgctattaccagaaaagtctatccagtgtcc
gatcaacaaggggtgtccaatcaacagagaaagttaacaccagcaaagtttgaggcttgg
aaaatgtggatggaagatggtctcaaaatagagaaaattgctaacttcccaggtaggtca
gctcctataaaagaacaaactgttattgactacatactcgatgcggcccgagaagggttg
gcaatggattggatgagattttgccaagagatcggactaacacacgaagtgttgtcagat
attcagagtgccattttaaaggttggctcgaaagaaaagttgaagcctataaagaatgaa
ttaccagaagatgtaagttattcacatatcaaggtctgcttgacaatgcaagagattggg
gtgtctccctcggatactatgtccaactgccacaagaaacctgcagatctgcccatagac
tctgatgaggatccagtatcaaaaaaacgacaaagagtcgttgaaccagcggaaggaatc
tccacaccaccggaggcaactgaggattctgtgctagattggattaagaactttaaggat
ggagttactctatcagatatcgtgaagcactttaatggatctcaagaagaatctatcaat
gagctaatctgttctcttgaagctgaatttttaatctataagaagaataacgtatataag
attatgtaa
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