KEGG   Cannabis sativa (hemp): 115721693
Entry
115721693         CDS       T08987                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03040  Spliceosome
csav04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115721693
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    115721693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csav03041]
    115721693
   04121 Ubiquitin system [BR:csav04121]
    115721693
   03400 DNA repair and recombination proteins [BR:csav03400]
    115721693
Enzymes [BR:csav01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     115721693
Spliceosome [BR:csav03041]
 Complex B
  Other components
   Prp19 complex
    115721693
 Complex C
   Prp19-CDC5 complex
    115721693
Ubiquitin system [BR:csav04121]
 Ubiquitin ligases (E3)
  U-box type E3
   115721693
DNA repair and recombination proteins [BR:csav03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    115721693
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SPT8 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_DCAF12 WD40_like Beta-prop_DCAF4 U-box zf-Nse PAS_11 V_ATPase_I_N PUMA_CC
Other DBs
NCBI-GeneID: 115721693
NCBI-ProteinID: XP_030506618
LinkDB
Position
9:complement(3028207..3035196)
AA seq 522 aa
MNCAISGEVPEEPVVSKNSGLLFEKRLIERHISEYGKCPITGESLTMDDIVPVKTGKIVR
PRPVQAASIPGMLGMFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERHIPASTPITVNASAVSNGRTVTPDEVGPGGKKICPGISASIFDELT
ECNAALSQQRKKRQIPSTLAPIDDLERYTQISSHPLQKTSKPGIASIDIHHNKDIIATGG
FDTNAVIFNRSSGEILSTLSGHSKKVTSVKFVGRDDLFLSSSADKTVRIWQGSDDGNYNC
NHVLKDHNAEVQAVTVHATNNYFVTASLDNTWCFYELSSGLCLTQVEDPTGSEGGYTSAA
FHPDGLILGTGTSEAIVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAASDGVKL
WDLRKLRNFRTFAPYGSETPTSSVEFDHSGSYLALAGADIRVYQVANVKSEWNCIKTFPD
LSGTGKATCVKFGPDAKYLAVGSMDRNLRIFGLPGDTEAMES
NT seq 1569 nt   +upstreamnt  +downstreamnt
atgaactgcgcaatctccggcgaggtgccggaagagcccgtcgtttcgaagaactctggc
ttgctcttcgagaagcgtttaatcgaaagacacatatcggaatatggaaaatgcccaata
acaggcgaatctcttactatggacgatattgttcctgttaaaactggaaagatagttcgg
ccaagacctgtacaagctgctagtatccctggaatgcttggaatgttccagactgaatgg
gatagtttgatgctatccaattttgcattggaacaacagctccatactgcacgacaggag
ttgagtcatgctttataccagcatgatgctgcatgccgtgtgattgcaagactaaagaaa
gaaagagatgaagcaagatcactactcgctcaggctgagagacacatccccgcatcaaca
cccattacagtaaatgcgtctgcagttagcaatggaagaacagttactcctgacgaagtg
ggacctggtggaaagaaaatctgtcctggaatatcagctagcatatttgatgagcttaca
gaatgtaatgctgctctctcgcagcaacggaaaaagcggcagataccatcaacattggct
cctattgatgatctagagaggtatactcagatatctagtcatccacttcagaaaacaagt
aaaccaggcattgcatctattgatatacatcataacaaggacatcattgcaactgggggt
tttgatacaaatgctgttatattcaatcgatcttcaggggaaatcttatctactcttagt
ggtcactcaaagaaggttacaagtgtaaaatttgtaggacgtgatgacttattcttgagt
agttcagcagacaagacagtacggatatggcaagggtcggatgatggaaactataattgc
aaccacgttttgaaagatcataatgctgaggtgcaagcagttacagttcatgccacaaat
aattattttgtcactgcttctcttgacaacacatggtgcttttatgagctttcttctgga
ttgtgcctcactcaggtagaggaccctacaggatctgagggtggctacacatccgcagcg
tttcatcctgatggtcttatccttggaacgggaacctcagaggctattgttaaaatttgg
gatgtgaaaagtcagacaaacgttgccagatttgatggacatgttggagcagtaactgct
atatctttctctgaaaatggttacttccttgcgactgcagcaagtgacggtgtgaagctc
tgggatttacgtaaattgaggaacttcaggacatttgctccttatggttcagagacgcca
acaagctctgttgaattcgaccatagtggaagttaccttgcacttgcgggtgctgatata
agagtttaccaggttgcaaatgttaaatcggaatggaattgtatcaaaactttccctgat
ttgtctggcacaggtaaagcaacgtgtgtaaaatttggcccggatgcaaagtaccttgca
gttggatcaatggaccgaaacctccggatttttggcctaccaggggataccgaagcaatg
gagtcttaa

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