Cannabis sativa (hemp): 115722145
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Entry
115722145 CDS
T08987
Name
(RefSeq) nuclear pore complex protein NUP160
KO
K14303
nuclear pore complex protein Nup160
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115722145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115722145
03036 Chromosome and associated proteins [BR:
csav03036
]
115722145
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115722145
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
115722145
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
NUP160_helical
Nucleoporin_N
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
115722145
NCBI-ProteinID:
XP_030507136
LinkDB
All DBs
Position
9:20987107..21003071
Genome browser
AA seq
1509 aa
AA seq
DB search
MATRCTLAGVEVPIIGSDSVKWIDLELPPPPSAAAIAIADSEANFDFQTTCAPLADDFAS
SSAIGDPPTYIIWRIHKSLPTALELLELSADKEFPKIGLRIAFPDALSAFAFVCKNEVDL
NSRNHPYLLYALTVSGTAYLLRIKNISAYKSYFILPAEDVIRVFDMRSYGHITSVAAMPS
GCLIAGRTDGSTGCFQLGMRDPSAPASVLELRDDSGFGRLWSLVSRGRTIEAVQDLVVAK
VCGKQLLFVLHSDGTLRIWDLSSHTKISSHNMNHPTSSGAALVRLWINEAGQDSSGVYLA
VLSRHTSDVSFEMVYLYTLHCSLGDKIVLLLDPSISMIPLEDGACIDVKLASDKIWVLKE
NGLVVQSMFHNDINVDVEETSYYNLQEEFVADQLFQSPEYLSDNLLLMAHSVFPSAKAQI
SSVVSSIFLRRLLHPGVYHNIALRATFLDYNRHWTDSDFQSLTADGLKKEILSLIEDEDV
SQNLVSIHCSWKNFCSRYFLNWCKSNAPCGLLVESIAGSVGVIRKSSVSLFRCSEDIERL
LYGYSSDEIGDSAVSFGIEFFDSKYERGILVDLLRCVISISQQLGKTASAIFYESLVSRP
IFPSEEVVPHVLKILETGYSSTLAAVSVSEFGNDDAWEKKLKDHKNLRKFSIDMLLSLHA
LCEKATTWSRVLNIIENYLKFLVPRKMMQNLDADPSLSINATILVQATSQIAKTMFESAL
DILIFLSYLVNNSGQIHMLPDNVSKIQLELIPMIQEIISEWLIIHFFTTTSSESASIEDF
SSQLSLLQIDNNASKRSWNENLGKCDFPLAFVLLLNTRSSTRDSHLYSKYLPNLHDIVRS
VRNFSSWIIWGKTRELTTFLSHSTELALILLKNGQYDAVEHLLSMVEAHSQKEKTLETIQ
DADVGWCILHHVLGCCLLAQAQRGLHGKLKEKKVSEAVRCFFRASSVKDAAQTLQSLPPE
VGIPHLGFSVNTSGPAWKLHYYQWAMQIFEQYNISEGACQFALAALEQVEEALTVNSEHH
GRDPFDESAAIIKGRLWANVFKFTLDLHHYYDAYCAIISNPDEESKQICLRRFIIVLYEC
SAVKILCSGQLPFIGLIDKVEQELAWKAERSDILAKPNLYKLLYSFEMHRHNWRKAASYI
YQYSARLKTEADQRDYQQSSLDLQERLNGLSAAVNALHLVHPAYAWIDPMFDRPVHEEHY
PSKKAKTTVEEEQGKDIQPKKWRCIDIERIDNEFVLTSAEYLLSLAQVKLKFNEIRENLP
NLIGILVEADIYDMAFTVVLKFFKGSDLKRELERVFTVMSMKCCPDKVDSSWTGDDRQKR
LLLLTSSKNEVAVRGSPDNSSTQPFKGSNQWASLERYLEKYKGFHARLPLIVAETLLRTD
PQIELPLWLVNMFKDCRSERSWRMTGQEANPALLFRLYVDYGRYTEATNLLLEYIESYAS
MRPVDIINRKRPFAVWFPYTAIQRLWFSLEELISLGHMVDQCEKLKELLHGALHRHLGLV
KVDSVDLKI
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaggtgcaccctagctggtgtggaagtccccattatcggcagcgactccgtt
aaatggatcgaccttgagcttcctcctcctccttctgctgctgccattgccattgccgat
tcggaagctaattttgattttcaaactacctgtgccccgctggctgacgatttcgcgtct
tcctctgccatcggcgatcctcccacttatatcatatggagaatccacaagtctctacca
actgctctggagctacttgagctgtctgctgataaagaatttcccaaaattggattgcga
attgcttttccggatgcgctctctgctttcgctttcgtctgcaaaaatgaggttgattta
aattcaaggaaccacccttacctgctttatgcgttgactgtgtcgggaactgcttatctt
ttgagaataaaaaacatctcggcatacaaatcctacttcattttgccagcggaggatgtg
atcagagtgtttgacatgcgtagttatggccatataacaagtgtagcagcaatgccctct
ggatgtcttatagctggaaggaccgatggatctactggttgttttcaactaggcatgcgc
gaccctagtgctcctgcttctgtgcttgagcttcgggatgattcaggatttggtcgtttg
tggagtcttgtgtcaagaggtagaacaatagaggctgtacaagatttggtggtagcaaaa
gtttgtggaaaacaacttttatttgtgcttcattcagatgggacacttcgaatttgggat
ctttcaagtcataccaagatcagtagccataatatgaatcatccgacatcgtcaggagct
gcattggtaaggttatggattaatgaagctggtcaagattcaagtggtgtgtatttggct
gtcttgtctagacatacttcggatgttagcttcgagatggtttacttgtacactctgcac
tgtagtttgggggacaaaattgttttgctactggatccttctatttcaatgattcccttg
gaagatggggcatgcattgatgtcaagcttgcttcagataagatatgggtactaaaggaa
aatgggttggtagttcaaagtatgtttcataatgacataaatgttgatgtggaggagaca
agctattataatttgcaggaagaatttgttgctgatcaactatttcaaagtcctgagtat
ttatcggataatcttttattgatggctcattcagtttttccatctgctaaggctcaaatt
tcgtcagttgtatcttccattttcttacgtaggctgctacatcctggagtatatcacaat
attgccctgcgtgcaactttcctggactataatagacactggactgactctgatttccag
tcattgactgctgatggattgaagaaggaaattctttctctgattgaagatgaggatgtc
agtcaaaatttagtgtcaattcattgctcctggaaaaatttctgttcacgctacttcctt
aattggtgcaaaagcaatgcaccttgcggtttgcttgttgagtcaatagctggctctgtc
ggtgtaataagaaagagttcagtatccctattccgctgttcagaagacattgaacggtta
ctttatggttattcttccgatgaaatcggtgatagtgctgttagttttggcatagaattt
tttgacagtaagtatgaacgtgggatactagttgatctgctcagatgtgtcattagtatc
agccaacaactaggaaaaacagcttctgctatattttatgaatcacttgttagcagaccc
attttcccaagtgaagaagttgttccacatgtattgaagattttagaaactggatatagt
tcgacgttagcggctgtgagtgtatccgagtttggtaatgatgatgcttgggagaaaaaa
ctaaaggatcacaaaaacttaaggaaattttctattgacatgctcttatctcttcacgcc
ttgtgtgagaaagctactacatggagcagagttctgaatattattgaaaattatcttaaa
tttcttgtacctcggaaaatgatgcagaatttggatgctgacccttccttaagcattaat
gctaccattttggtccaggccacttctcaaattgcgaagacaatgtttgagtctgcattg
gacattcttatattcctaagctatcttgtaaacaacagtggccagatccatatgttgcct
gacaatgtatctaagatacagttggagttgattccaatgattcaagaaatcatttctgag
tggcttatcattcactttttcaccaccacatcctctgagtcagcatcaattgaagatttc
agctctcaactttctctgttacaaattgataataatgcaagcaaaagatcttggaatgaa
aaccttgggaaatgcgatttccctttggcctttgtgctcttattgaacaccagaagttcc
accagagacagtcatctttattcaaaatatcttccaaatttgcatgacattgttaggtct
gttcggaacttcagtagctggattatttggggcaagactagggagttaactactttcttg
agccattcaactgagcttgcattgatcttactaaagaatgggcagtatgatgctgttgag
cacctactcagtatggtcgaggcacattcacagaaggagaagacattggaaactattcaa
gatgctgatgttggatggtgcatacttcaccatgttcttggatgctgtcttcttgctcaa
gcacaacgtggattgcatggaaagctgaaagaaaagaaagtcagtgaggctgtcagatgt
ttcttcagagcctcatccgtaaaagatgctgctcaaactttgcagagtttgcctccagaa
gtaggaattccacatcttggcttcagtgttaacacatcaggtcctgcatggaagctacat
tattatcagtgggcaatgcaaatatttgagcaatataatattagtgaaggtgcatgtcag
tttgctcttgctgcacttgagcaagtcgaggaagctttaactgtgaatagtgagcaccat
ggtagagatccatttgatgaatcagcagccatcatcaaaggacgactttgggcaaatgtc
ttcaaatttacattagatcttcatcactattatgacgcatattgtgcaataatatcaaat
ccagatgaggagagcaagcagatttgtttgaggcgtttcataattgtactttatgagtgc
agtgctgttaagattctttgcagtggtcaacttcctttcattggtttaattgacaaggta
gagcaggagcttgcctggaaggcagagcgctcagatatattagcaaaaccaaacttgtat
aagctgctttattcttttgaaatgcatcgacacaactggcgaaaagccgcaagttacata
tatcaatattctgctcgtttaaagacggaagcagatcaaagagactaccaacagagttca
ttggatttgcaagaaagattaaatgggctatctgctgctgtaaatgcccttcatcttgtt
catccagcatatgcttggattgatcctatgtttgacagacctgtccatgaagagcattat
ccaagtaaaaaggctaaaacaacagtagaggaagaacaaggtaaagatattcagcccaag
aaatggcgatgtattgatatcgaaagaattgataatgagtttgtgctaacatcagcagaa
tatttactttcattagcacaagtgaaactaaaatttaatgaaattcgcgagaatttacca
aatttgattggtattttagtcgaggcagatatatatgacatggcattcacagttgttcta
aaattctttaaaggttcagacttgaagagggaactcgaaagggtttttactgtgatgtca
atgaaatgctgcccagataaagttgattcatcgtggacaggggatgatcgccaaaagcgt
cttcttctgttaacttcttcaaagaatgaagtggctgtacgtggctcgcctgataatagc
tcaactcaaccattcaagggaagtaatcaatgggcttcccttgagcgttatcttgaaaag
tacaagggatttcatgccagattaccattaattgttgctgaaactcttcttcgtactgat
cctcaaatcgaattgcctctctggcttgtgaacatgttcaaggattgtcgaagtgaaaga
tcctggaggatgactggtcaagaagcaaatcctgcattgttatttaggctatatgttgat
tatggtcgttatacagaagcgacaaatcttttgcttgagtacatagaatcttatgcatca
atgagaccggtagacataatcaatcgcaaaagaccatttgcagtttggtttccatacaca
gcaatccagcgcctctggttttcactggaggaactcatcagtttgggtcacatggtagat
caatgtgagaaactcaaagagcttttacatggagctttgcatagacatctggggctggta
aaggtggactcagtcgacttgaagatctaa
DBGET
integrated database retrieval system
