KEGG   Cannabis sativa (hemp): 115722268
Entry
115722268         CDS       T08987                                 
Name
(RefSeq) protein RRP6-like 2
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115722268
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csav03019]
    115722268
Messenger RNA biogenesis [BR:csav03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     115722268
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT DUF4315
Other DBs
NCBI-GeneID: 115722268
NCBI-ProteinID: XP_030507290
LinkDB
Position
9:complement(58823065..58828135)
AA seq 883 aa
MAEDAMNVDQYSPNKAQSLYTLTNGPLASSLSKLSGSSRGIPSNKDFYFYNNFDDFRAPI
QEIDNKSQSLLESVGSSSSRMWNKHMPFPVDMDEAMDWLNNANDEIFERVDMSIDEFQRN
RNSEEAAGKVMNASSSVVDDNDGFQLVCGKKKKGANQLPSGFQDSNSSITVATKDKKTTV
GSKPKIPFHIPSITRPQQEFNIFVNNNNQAFEHVWLDKSEDGKYVHPLKKFSFMDFVDKD
SDVLHIEPVKPSPVETTPFTFVDEVIDLKNLAIKLSGVNEFAVDLEHNQYRSFQGLTCLI
QISTRTEDFVIDALKLRTRIGPYLREAFKDPTKRKVMHGADRDIFWLQRDFGIYICNMFD
TGQASRILKLERNSLEYLLHHFCGVTANKEYQNADWRLRPLPKEMLRYAREDTHYLLHIY
DLMRMKLLSLSKESESSEISLQEVYKRSYELCIQLYEKEIQNENSYLYIYGLQEAGLNAQ
QLAVVSGLCGWRDLMARTEDESTGYILPNKTLIEIAKKMPETTSKLRQLVKSKHSFIEQK
LGAVVNVVRSNKLKASEFEAVAEQLKEGRAALASEENVVVDDDPEASEIAIATVESISDG
TLMDNSPSTLLCNGNSGVLKEGLTVSGQREDRNTSTSLPVLPKASAVTVQAQKKPNRAFG
ALLGSKIPKKKTDLSKKDKEEATLEQIRASVHLPFHSFSSTFEQPKPVVEAPVATLEVPV
SDHPANTLPVSSKLDDIIMLQTVNSDAEESKSDSGTTLKDTDNNPAVSSSKIDKEEEPMS
LSDLSSSFKQCFQDRKTKQVERTQESGGGLKLEPFDYEAARKQVLFGENNTKEQRKSGAG
NSKGKKKSDKSRASNNDEELGDFSQGRRRKAFPATGNRSSTFR
NT seq 2652 nt   +upstreamnt  +downstreamnt
atggccgaagacgccatgaacgtcgatcaatactcacccaacaaggctcaatccctatat
actctaaccaacggtccattagcatcgtctctatccaaactttcaggctcatcgcgagga
attccgtcgaacaaagacttctatttttacaacaacttcgatgatttccgagctccaatt
caagaaatcgataataaatcacagtctttgctcgaatcagttggttcttcttcgtcacgt
atgtggaacaaacatatgccttttcctgtagatatggatgaggctatggattggttaaat
aatgctaacgacgagattttcgagagggttgatatgtcgattgatgaatttcagaggaat
aggaatagtgaggaggctgctgggaaggttatgaatgcgagttcttcggttgttgatgat
aatgatgggtttcagttggtatgtgggaagaaaaagaagggggcaaatcagttgccgagt
gggtttcaagattctaattcttcgattacggttgcgactaaggataagaaaaccactgtt
ggttcgaagccgaagattccgtttcatataccttcgattacgagacctcaacaggagttt
aatatctttgttaataataataaccaagcgtttgagcatgtttggttggacaagagtgag
gatggaaagtatgttcatcctctgaagaagttttcttttatggattttgttgataaagat
agtgatgttctgcatattgagccggtaaagccaagtccagttgagactacaccattcacg
tttgtagatgaagtaatagatttgaagaacctagctattaagctgagtggtgtaaatgaa
tttgcggttgatttggaacataatcaatatcgttcattccaaggattgacctgtttgata
caaatatcaacgagaaccgaagattttgtaatagatgctctgaagctccgaacgcgtatt
ggcccatatcttagagaagctttcaaggacccaacaaaaagaaaggtgatgcatggagca
gatcgtgatattttttggcttcaaagagatttcggcatttacatctgcaatatgtttgac
actggccaggcctcaaggatactgaaattggagagaaatagtctggaatatcttctacac
cacttttgtggagtaactgctaataaagaatatcaaaatgcagattggagattgcggcca
cttcctaaggagatgcttagatatgctagagaagatacgcactatctattgcatatatat
gacttaatgagaatgaaattgctctcattgtcaaaggaatctgaaagctctgaaatttct
ttacaagaggtttacaagcgcagttacgaattatgtatccagctctatgagaaagagatc
cagaacgaaaattcgtatctatatatatatgggttgcaagaggctggtttaaatgctcag
cagctagcagttgtttcgggactttgtgggtggcgagatcttatggcgcgtactgaagat
gaaagtactggctatatattgccaaataaaactcttatagaaattgctaagaagatgcct
gaaactaccagtaagctacgacagttggtcaagtcaaagcactcattcattgagcagaag
cttggtgctgttgttaacgtcgttaggtctaacaagctaaaggcttctgaatttgaagct
gttgctgaacaactgaaagaggggcgtgctgctttggcatctgaagaaaatgtagtagtc
gacgacgaccctgaagcatctgaaattgcaatagccactgtggaaagcatctctgatggc
actctaatggataatagtcctagcactctattgtgcaatggaaactctggggttctgaag
gagggtcttaccgtttcagggcagagagaagacagaaataccagtacttctttaccagtt
ttaccaaaggcctctgctgtaacagtacaagcgcaaaagaaacctaaccgggcttttggt
gcactcctgggaagtaaaatccccaagaaaaagactgatctaagtaaaaaggacaaggaa
gaggccacattggagcaaattagagcttcagtacacttaccattccattctttttccagc
acctttgaacaaccgaagccagttgtggaagcacctgttgcaacccttgaagttccagtt
tccgatcatcctgcaaacacattaccagtcagctctaaattggacgatatcataatgttg
caaactgttaattctgatgccgaggaatcaaaaagtgattcaggaacaaccttgaaagac
actgataacaatccagcggtgtccagctcgaagatagataaagaggaagaaccaatgagt
ctctccgatctgtcatcaagcttcaaacaatgtttccaggataggaaaaccaaacaagta
gaaagaactcaggaatccggtggtggcttgaaattggagccattcgactatgaagcagca
aggaagcaggtcctatttggagagaataatacaaaagaacagaggaaaagtggcgcggga
aattctaagggtaagaaaaagtctgataaaagtcgagcatcgaacaacgatgaagagtta
ggtgatttctctcaaggtagacgtcgtaaagcttttccagcaacagggaaccgtagttca
acctttcgctga

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