Cannabis sativa (hemp): 115722268
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Entry
115722268 CDS
T08987
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115722268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115722268
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
115722268
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
DUF4315
Motif
Other DBs
NCBI-GeneID:
115722268
NCBI-ProteinID:
XP_030507290
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Position
9:complement(58823065..58828135)
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AA seq
883 aa
AA seq
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MAEDAMNVDQYSPNKAQSLYTLTNGPLASSLSKLSGSSRGIPSNKDFYFYNNFDDFRAPI
QEIDNKSQSLLESVGSSSSRMWNKHMPFPVDMDEAMDWLNNANDEIFERVDMSIDEFQRN
RNSEEAAGKVMNASSSVVDDNDGFQLVCGKKKKGANQLPSGFQDSNSSITVATKDKKTTV
GSKPKIPFHIPSITRPQQEFNIFVNNNNQAFEHVWLDKSEDGKYVHPLKKFSFMDFVDKD
SDVLHIEPVKPSPVETTPFTFVDEVIDLKNLAIKLSGVNEFAVDLEHNQYRSFQGLTCLI
QISTRTEDFVIDALKLRTRIGPYLREAFKDPTKRKVMHGADRDIFWLQRDFGIYICNMFD
TGQASRILKLERNSLEYLLHHFCGVTANKEYQNADWRLRPLPKEMLRYAREDTHYLLHIY
DLMRMKLLSLSKESESSEISLQEVYKRSYELCIQLYEKEIQNENSYLYIYGLQEAGLNAQ
QLAVVSGLCGWRDLMARTEDESTGYILPNKTLIEIAKKMPETTSKLRQLVKSKHSFIEQK
LGAVVNVVRSNKLKASEFEAVAEQLKEGRAALASEENVVVDDDPEASEIAIATVESISDG
TLMDNSPSTLLCNGNSGVLKEGLTVSGQREDRNTSTSLPVLPKASAVTVQAQKKPNRAFG
ALLGSKIPKKKTDLSKKDKEEATLEQIRASVHLPFHSFSSTFEQPKPVVEAPVATLEVPV
SDHPANTLPVSSKLDDIIMLQTVNSDAEESKSDSGTTLKDTDNNPAVSSSKIDKEEEPMS
LSDLSSSFKQCFQDRKTKQVERTQESGGGLKLEPFDYEAARKQVLFGENNTKEQRKSGAG
NSKGKKKSDKSRASNNDEELGDFSQGRRRKAFPATGNRSSTFR
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagacgccatgaacgtcgatcaatactcacccaacaaggctcaatccctatat
actctaaccaacggtccattagcatcgtctctatccaaactttcaggctcatcgcgagga
attccgtcgaacaaagacttctatttttacaacaacttcgatgatttccgagctccaatt
caagaaatcgataataaatcacagtctttgctcgaatcagttggttcttcttcgtcacgt
atgtggaacaaacatatgccttttcctgtagatatggatgaggctatggattggttaaat
aatgctaacgacgagattttcgagagggttgatatgtcgattgatgaatttcagaggaat
aggaatagtgaggaggctgctgggaaggttatgaatgcgagttcttcggttgttgatgat
aatgatgggtttcagttggtatgtgggaagaaaaagaagggggcaaatcagttgccgagt
gggtttcaagattctaattcttcgattacggttgcgactaaggataagaaaaccactgtt
ggttcgaagccgaagattccgtttcatataccttcgattacgagacctcaacaggagttt
aatatctttgttaataataataaccaagcgtttgagcatgtttggttggacaagagtgag
gatggaaagtatgttcatcctctgaagaagttttcttttatggattttgttgataaagat
agtgatgttctgcatattgagccggtaaagccaagtccagttgagactacaccattcacg
tttgtagatgaagtaatagatttgaagaacctagctattaagctgagtggtgtaaatgaa
tttgcggttgatttggaacataatcaatatcgttcattccaaggattgacctgtttgata
caaatatcaacgagaaccgaagattttgtaatagatgctctgaagctccgaacgcgtatt
ggcccatatcttagagaagctttcaaggacccaacaaaaagaaaggtgatgcatggagca
gatcgtgatattttttggcttcaaagagatttcggcatttacatctgcaatatgtttgac
actggccaggcctcaaggatactgaaattggagagaaatagtctggaatatcttctacac
cacttttgtggagtaactgctaataaagaatatcaaaatgcagattggagattgcggcca
cttcctaaggagatgcttagatatgctagagaagatacgcactatctattgcatatatat
gacttaatgagaatgaaattgctctcattgtcaaaggaatctgaaagctctgaaatttct
ttacaagaggtttacaagcgcagttacgaattatgtatccagctctatgagaaagagatc
cagaacgaaaattcgtatctatatatatatgggttgcaagaggctggtttaaatgctcag
cagctagcagttgtttcgggactttgtgggtggcgagatcttatggcgcgtactgaagat
gaaagtactggctatatattgccaaataaaactcttatagaaattgctaagaagatgcct
gaaactaccagtaagctacgacagttggtcaagtcaaagcactcattcattgagcagaag
cttggtgctgttgttaacgtcgttaggtctaacaagctaaaggcttctgaatttgaagct
gttgctgaacaactgaaagaggggcgtgctgctttggcatctgaagaaaatgtagtagtc
gacgacgaccctgaagcatctgaaattgcaatagccactgtggaaagcatctctgatggc
actctaatggataatagtcctagcactctattgtgcaatggaaactctggggttctgaag
gagggtcttaccgtttcagggcagagagaagacagaaataccagtacttctttaccagtt
ttaccaaaggcctctgctgtaacagtacaagcgcaaaagaaacctaaccgggcttttggt
gcactcctgggaagtaaaatccccaagaaaaagactgatctaagtaaaaaggacaaggaa
gaggccacattggagcaaattagagcttcagtacacttaccattccattctttttccagc
acctttgaacaaccgaagccagttgtggaagcacctgttgcaacccttgaagttccagtt
tccgatcatcctgcaaacacattaccagtcagctctaaattggacgatatcataatgttg
caaactgttaattctgatgccgaggaatcaaaaagtgattcaggaacaaccttgaaagac
actgataacaatccagcggtgtccagctcgaagatagataaagaggaagaaccaatgagt
ctctccgatctgtcatcaagcttcaaacaatgtttccaggataggaaaaccaaacaagta
gaaagaactcaggaatccggtggtggcttgaaattggagccattcgactatgaagcagca
aggaagcaggtcctatttggagagaataatacaaaagaacagaggaaaagtggcgcggga
aattctaagggtaagaaaaagtctgataaaagtcgagcatcgaacaacgatgaagagtta
ggtgatttctctcaaggtagacgtcgtaaagcttttccagcaacagggaaccgtagttca
acctttcgctga
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