Cannabis sativa (hemp): 115722369
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Entry
115722369 CDS
T08987
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115722369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115722369
Spliceosome [BR:
csav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
115722369
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
115722369
NCBI-ProteinID:
XP_030507425
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All DBs
Position
9:1070044..1074808
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AA seq
851 aa
AA seq
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MEKEKTTNKRTREERDHRKHRTRDADDKRSSRDLDHDHHHRHHRSDRDHKSRRESRHEDR
EGSREREGSRDRPYDRESKRERSYEPRIDEKANHHRESKREMSEEREASVERRHKRKERG
TSEDNRDGDGEKRAKVYDDGRKEKRRLEDRAEEDEQEDNGGRRRFEDGQLKEVKEEVAHV
HLDNSQTPAGNGKENGNGSLGNVAAPEPLVMSSGSLPETSFTPSHPLPTKVSSISTTHEN
KGVSITRSHEVPGKSSTDGTSSTAGKSTSLSLDALAKAKKALQMQKELSEKMKRIPLLNK
GVGASSENSRNFGPKEGLKPGSVSSSTSATAITEATLNSSNHASGNPASGLATSAGLTAI
PNYEAVKRAQELAARMGFRQDPEFAPLINLFPGQATTDVAAAPQKPTKAPVLRLDALGRE
IDEHGNVVNLTKPSNLSTLKVNINKQKKDAFQILKPELDVDPESNPHFDSSMGLNIAKIM
RPKRMNFLFVEEGKWSKDAEHIKLKSKFGDAQAKEHRAKQAQLAKANAAPDINPNLIEVS
ERVMTKEKPKEPIPEVEWWDVPLLHSGLYGDVADGNISDGILRLEKITIYVEHPRPIEPP
AEPAPPPPQPLKLTKKEQKKLRTQRRLGRERERQEMIRQGLIEPPKPKVKMSNLMKVLGS
EATQDPTRLEKEIRSAAADREQAHIDRNTARKLTPAERREKKERKLFDDPNTVETLVSVY
KINDLSHPQTRFKVDIFARQNRLTGCAVIADGITVVVVEGGSKSIKRYGKLMLRRINWEN
AVKDEEEDEDEEDDKPPNKCVLVWQGSVAKPTFTKFLIHDCMTEAAARKIYADAGVVHYW
DLAINFTDDQN
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagagaagacaacgaacaagcgcacccgggaggagcgtgaccatcggaagcat
cgcacccgtgatgctgatgacaaaaggtcttctagagacctcgatcatgaccatcaccac
cgccaccaccgctcggaccgcgaccacaaatcccgtcgagagtcgagacacgaagaccgc
gagggttcgcgagaaagagaagggagtcgagataggccctacgatcgcgaatcgaagcgt
gagaggtcgtatgagccgaggattgatgaaaaggctaatcatcatcgggaatcaaagcgc
gagatgtctgaagagagggaggcgtctgtggagaggagacataagaggaaagagaggggt
acaagtgaggataatagggatggggatggtgagaagagggctaaggtttacgatgatggg
aggaaggagaagaggcggttagaggatagagctgaagaagatgagcaagaagataatggg
ggtcgccggagatttgaggatggacagttgaaggaagtgaaagaagaagttgctcatgtg
catttggataattctcaaacccctgctgggaatggtaaagagaatgggaatggttcactg
ggcaatgttgctgcgcccgaaccactggttatgtcatcagggagtttacctgaaacctct
ttcacccctagtcatccccttcctaccaaggtatcttcgatttctacaacacatgaaaat
aagggagttagtattaccagatctcatgaggttcctggaaaatctagtacagatgggaca
tcttcaactgctggaaaaagtacaagtctgtctcttgatgctttagcaaaagctaagaaa
gctttacagatgcagaaggaattatcagagaagatgaagagaattccccttttgaacaag
ggtgttggtgcaagttcagaaaatagccgaaactttggtccaaaggaggggttgaagcct
ggatctgtatcatcatcaacctctgctacagctataaccgaggcaacattgaattcctca
aaccatgcttctgggaaccctgcaagtggcttggctacttctgctggtcttacggccatt
cccaactatgaggctgtaaaacgtgcacaagagctagctgccaggatgggatttcgccag
gacccagagtttgctcctttaataaacttgtttccaggacaggctacaaccgatgtagct
gctgccccccagaagcctactaaagctcctgttcttcgccttgatgctctcggcagggaa
atagatgagcatggaaatgttgtgaatctgactaaaccaagcaatctcagcaccttaaag
gttaacattaacaaacagaagaaagacgcatttcagatacttaaacctgaactagatgtg
gatccagaatcaaatcctcattttgattcaagtatgggtttgaatatagctaaaatcatg
cggcctaagaggatgaatttcctctttgtagaggaaggaaagtggtctaaagatgctgag
catataaaattgaagagtaaatttggagatgcacaagccaaagagcacagagcaaagcag
gcacagttagcaaaggcaaacgcagctcctgatataaatccaaacttgatagaagtatct
gagagagttatgacaaaagaaaaaccaaaggaacctattcctgaagttgagtggtgggat
gtgcctcttttgcactctggtctttatggagatgttgctgatggtaatatttcggatggt
atattaaggctggagaaaatcaccatctatgttgagcatcctcgtcctattgagccccct
gctgagccagctcctcccccacctcaaccgctcaagttaacaaagaaagaacaaaagaaa
ctccgtacacaacggcgattgggtagggagagagaaaggcaggagatgattagacaaggc
ctgatagaacctccaaaaccgaaagttaaaatgagtaatttgatgaaggttcttggttct
gaagcaacacaagatccaactaggcttgagaaggaaattcgtagtgcagctgctgatcgt
gaacaagctcacatagaccggaatactgcacggaagctcactcccgctgagcgccgcgag
aagaaagagcggaagctttttgacgatccaaacacagtggagaccctagtttcagtttac
aagataaatgacttgtcgcatcctcagactcgatttaaggttgacatttttgcacgacag
aaccgattgactggatgcgctgttatcgctgatggtatcacagtagttgttgtcgaaggt
ggaagtaaatccattaagaggtacgggaagcttatgcttaggcgaataaactgggaaaac
gctgtgaaagacgaggaagaggacgaagatgaagaagatgataaacctccgaacaaatgt
gtgttagtttggcaaggcagcgttgctaagcctacattcactaaatttttaattcatgat
tgcatgacggaagctgctgcccggaagatttatgctgatgcaggagttgttcattactgg
gatctcgctattaattttacggatgatcaaaactaa
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