Cannabis sativa (hemp): 115722603
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Entry
115722603 CDS
T08987
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20-like
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csav03009
]
115722603
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
115722603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RYDR_ITPR
Motif
Other DBs
NCBI-GeneID:
115722603
NCBI-ProteinID:
XP_030507709
LinkDB
All DBs
Position
9:1465104..1479422
Genome browser
AA seq
2693 aa
AA seq
DB search
MATPSHSMAVKSLNNSVGRRRFIFKTFSQRIEDIDIDVYRCLDIIKSEPSEGSSFFRDCL
VEWRELNTAEDFISFYEEIVPFVQTLPLVLLHKETIMLKLLSVLHIKARLSVEPILRLIA
ALSRDLLEEFLPFLPNIAESLYALLESGADTEPEIIEQIFTSWSYIMMYLQKYLINNLDL
VLKVTRKLRFYPKDFVQDFMAEAISFLFRNAPFDQLKLGVWKVIHEVAKKPDIATRKYGV
SALLCYVMKGTSSKLHSKAERVLRLLMSNPVLCAGDKYTEGSDIVVQGKKEKKVPNTVVE
VLILSLQRLCEIIEPKELNIMWKCLHMEIADSVKNKSLTRLSHLLSLLVSTVQINDGRSV
SNHQPMIDAVALLLQELILHTGITTEDSVPEIFDQVLELMLCTLDVLHNYDDMSIVSDCS
LQWAPVFELKSASLLAFIHKLLLKDHSILNFFKVNILSALNDLIETSPKEVVCLFLSLFE
RQSLDETSKGGLLKIQDFLRTDIQDVVSHGSSSTRLQENNLDLLWGTVNCFPYLLDPEKD
SSLLADFIDALDQCVVIESDNAAGVPKHVVQSIIGSAIHSYSKLHRGRNDKCEETSRFLH
LARRHKSCTQILSAVADFLDSAYGSIIEENCNSRTYHPELKADKAVDAIRLFAENLHHLE
KGHRVAALRLLCHYELLICDVSAEDQPAHKKLKTESSENSHTDSQSFNLLQLLLLIETTP
LSVSTFRTVTLYISKVHMALSAGRISEVYIPLLVNGMIGVFHNRFSYVWNPASECLAVAL
SNYVGLVWEGFLGYFKQILSTFQASNDQLDKAKAEFSSNASVLAERFKLFVAPPSDGTPL
ATVITLLLQSLQRIPTLVDSRSRDVVPLLLKFLGYDSSEHISVGSFSSLVCKGKDWKVIL
KEWLNLLKLMRNLKSFYRNQFLKDVLENRLLDANDPEIQSAVLECLLIWKDDFLLSYDQH
LKNILSFNSFREELTTWSLSRESKHIEEYHRPYLVPIVIRLLMPKVRKLKKNASRKHASV
NYRKAVLGFLAQLDVDELPLFYALLMKPLQIGTVGSDDTSDWFWTSSGSSKDRFQASNFL
KYFTVDNITALSWKKRNGFLHVIEDVVGVFDELRIKPFLDFLMGCVVRILESCTCSLDAA
KGYRSLDENQNSSNPSLLQKENTEGNTVSAISAVKQFKDLRSSCLKIVSLVLNKYEDHDF
GYDFWDLFFKSVKPLVESFKQEGSSGEKPSSLFSCFVAMTRSQKLVPLLCREKSLVPDIF
SILTVTSASEAIVRCVLKFIENLLYLDSELDGDDVKIVLLPNLDALICSLHGFFQSECAT
KRKLIKDPGEGEIRIFKFLSKYVKDPISARKFIDILLPFLSKGVQSSDVCRESVQVIQGI
IPILGSEITTTILNGISPLFVSGDRDLRTSLCDLLETLAQVDPSVTVVAKLVCDLNATST
VEIGALDYDIIINSYEKISANSANFFYTVPEDQALLILSHCVYDMSSTELILRHSSYGLL
LSFLEFAGEVLSHVENDLDTPPPKKIGDHWTVGSIKRIINKFLLKHLGHAMKGDASLKKE
WINLLREMVMKLPNMGNLDSLKVLCDEDVEIDFFNNIIHLQRHRRARALARFRNAIGSNS
MPEGIINKVFVPLFFSMLFEVQEGKGEHVRDACIDALASVSGQMKWDSYYSLLLRCFNEI
NLHPDKQKSLVRLICFILDQFHFSATASSCDNPSDSGTVESSSLITLSKCSGSSVLSEIQ
ICLQKTVLPKIQKLLESDSDRVNVNVNLAALKILKLLPGDIMDSQLPTIVHRVSNFLKNR
LESIRDEARSALAACLKELGLEYLQFLVKVLRTTLKRGYEMHVLGYTLNFILSKFLSVPV
CGKLDYCLEDLLSIVENDILGEVAEEKEVDKIASKMKETRKRKSFETLQLIAQSITFKTH
ALKVLSPVASHLQNRMTPKIKAKLESMLNHIAAGIGSNPSVDQTDLFIFLFGLIEDGIKN
KDENSTISNTPKNRKKGAGGKNVSSVRVKHVKSLGSHLIIVFALGILHKSVKSLKNAKND
VKVLAMLDPFIPLLGNCLNSKYEDVLSATLRCLTPLVRLPLPSIESQVDTIKGSLFDIAQ
STINVDSSLMQSCLRLLTVILGGTNTTLSSEELHLLIQLPLFVELERNPSFVALSLLKAI
VSRKLVVPEIYDLVTRVAELMVTSQVEPIRQKCSQILLQFLLDYRLSGKRLQQHLDSLLS
NLRYEHPSGRKAALEMLHAVIVKFPKSVVDDQSQTLFIHLVACLANDLDSEVRAMSGAAI
KRLIGCVSAHSLHSILESSLSWYMDEKPKLWSAAAQVLGLLVEGQKKGFEKHIRSSVLPR
ARTILKSAIDDYNDRSQDYSDEATIPFWKEAYYSLIMLEKILHEFHDLCFEEDLEDVWDA
ICELLLHPHTWLRDISSRLVAFYFSAVTELCKKNRELSLQSYFLTRPSRLFMIAVSTCCQ
LKTKVSDDAASNLIVQNIVFTVCGVHSLMGQPEHEQPQRFWSTLEQHEQGHFLKALKLID
SGKVQTSFLSLTLEDNGHSKALRNLLISTMLKKMGKIALQMESIQMKIVFNSYGKIFSQF
SDEDRQLYAYEILLPLYKVCEGFAGRLVSDDMKQLAQEVCDRVRQMLGVQTFVQVYSEIR
KMLKTKRDKRKQEEKIMAVVNPMRNAKRKLRIAAKHRAHKKKKIMTMKYGRWV
NT seq
8082 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccctctcattctatggctgtcaagtctctcaataactccgttggccgtcgc
cgcttcatcttcaagactttttctcaaagaatagaagacatcgacattgatgtgtatcga
tgtcttgatataattaaatctgagccatctgaaggctcttcattttttcgtgactgtctg
gttgaatggagggaactgaatactgctgaagatttcatctctttctatgaggagattgtg
ccatttgtgcaaacactacctctagtgttattacacaaagaaactattatgttaaagctt
ttatcagttttacatataaaagccagactttcggttgaacctattctcaggctaattgct
gctttatctagggatcttctagaggagtttttgcctttcttgccaaatattgctgagtcc
ctatatgctctccttgaaagcggtgcagatacagagccagaaattattgagcagattttt
acatcctggtcatatattatgatgtatttacagaaatatctcataaacaaccttgacctg
gtactcaaggttacccggaaattgaggttctatccaaaagattttgtccaagactttatg
gcagaagcaatatccttcttgttcaggaatgcaccttttgatcagcttaaactaggtgtt
tggaaggtcatacatgaagttgcaaagaagcctgatatagctacccggaaatatggagtc
agtgctttactttgctatgttatgaaaggaacctcatcgaaactccattctaaagcagaa
agagtattgcggttattgatgagcaatccagtactctgtgctggcgataaatacaccgaa
ggttcagatattgttgttcaaggcaaaaaagaaaagaaagttccgaatactgttgttgaa
gttttaattctctcattacaaagattgtgtgaaataattgagcccaaagaattgaatata
atgtggaaatgcttacacatggaaatagctgattctgttaagaataagtctcttactcga
ttaagtcacttgttatcgctgctagtctctacagttcaaataaatgacggaagaagtgtt
tctaatcaccaacctatgatcgatgccgttgcacttcttttacaggaactgatcttacat
accggaatcactactgaggatagtgtacctgaaattttcgatcaggttcttgagttgatg
ctttgcactcttgatgtgctgcacaactatgatgacatgtcaatcgtatccgactgttca
ttgcaatgggcaccggtatttgagttaaagagcgccagtttgctggcatttattcacaaa
ctactattgaaggatcattccatattgaatttcttcaaggttaatattctgagtgcgctg
aacgatttaatagaaacctcaccaaaggaagtagtatgtctatttctctctttatttgag
agacaaagcttagatgaaacttctaaaggagggcttttgaagattcaagattttctccgg
acagacatacaggatgttgtatctcatggttcatcatctactcgacttcaggaaaacaac
ttagatttgttgtggggtactgtcaattgttttccgtacttgttagatcccgaaaaagat
tcatcgctgctagctgatttcattgatgcacttgatcaatgtgtagtgattgaatctgac
aacgctgctggtgttcctaaacatgttgtgcaaagcattatcggctctgctattcattcc
tattcaaaattgcaccgtggtaggaatgacaaatgtgaggaaacaagcagatttttgcat
cttgcgagaaggcacaaatcgtgcactcaaatattatctgctgttgcagattttttggat
tctgcatatgggtcaataatagaagaaaactgcaactctcgtacatatcatccagaactt
aaagcagacaaggctgttgatgcaatacgtctatttgctgaaaatttgcatcacctggaa
aaggggcaccgtgttgcagctcttagattactctgccactatgaacttctgatttgtgat
gtttcagcagaggatcagccagctcataagaaactgaaaactgaatcttcagagaattcc
catacagacagccagagctttaatcttctgcagctccttctcttaattgagacaactcct
ctttcagtctctacattcaggacagtgaccttgtacatctctaaagtacacatggctctc
tctgctggaaggatatctgaagtttatattcctcttcttgtaaatggaatgattggtgtc
tttcataaccggtttagttatgtttggaatccagcgtcggaatgccttgcggtggcatta
agcaattatgttggtctagtatgggaaggattccttggttattttaagcagattctctcc
acattccaggcatcaaatgatcaactcgataaagcaaaggcagaattctccagcaatgca
agtgttcttgctgagcgctttaagttgtttgtcgctcctccctctgatggtacaccattg
gcaacagtaataaccttgttgctccaatctttacaaagaattccaacacttgttgattct
cgttcacgagatgttgttcctttgcttttgaagtttttgggctatgatagcagtgagcat
ataagtgtgggatcattcagttcacttgtttgtaaaggcaaagattggaaggttattcta
aaagaatggttaaatttgctgaaattgatgcggaaccttaagtccttttatcggaatcaa
tttcttaaagatgtgctggaaaataggcttttggatgcaaatgatcctgagatacagtca
gcggttcttgaatgcctgttgatttggaaagatgattttctgctatcatatgatcaacac
ctgaaaaatatacttagctttaatagtttcagagaggagctaaccacatggagtttatcc
agagaatctaaacatattgaagagtaccacagaccttaccttgtacctatagtgatccgt
cttctgatgccaaaagtcaggaagttgaagaagaatgcctcacgaaagcatgcaagtgta
aattatcgaaaggcggttcttggtttcttagcgcaacttgatgttgatgagcttcccctt
ttctatgcattgttaatgaagcctttgcaaattgggacagtgggaagtgatgatacgtct
gactggttttggacttcttccggaagctctaaagataggtttcaagcttcaaattttctt
aagtatttcacagttgataatattacagcattgtcatggaagaaaagaaatggttttctt
catgtgattgaagatgttgttggagttttcgatgagttgcgaatcaagccttttcttgat
tttttgatgggatgtgttgttcggatattggagagctgcacatgtagtcttgatgctgca
aagggatatagatctttggatgaaaatcaaaacagttcaaatccgtctttgcttcagaaa
gaaaatactgaaggaaatactgtctcggccatttccgctgtgaagcaattcaaggattta
aggtcctcatgcttgaaaattgtttctcttgttctcaacaagtacgaagatcatgatttt
ggttatgatttctgggacctcttctttaagtcagtgaagcctttggttgaaagtttcaag
caggaaggttctagcggtgaaaagcctagttcactcttctcttgctttgttgcaatgact
agaagtcagaaacttgtgcccctgctttgtcgggagaagagtcttgttcctgacatattc
tcaattctaactgttacatcagcatctgaagctattgtaagatgtgttctaaagttcatt
gagaacctattgtatcttgatagtgagttggatggtgatgatgtaaagatagttctactt
cccaatcttgatgcacttatttgtagcttgcatgggtttttccaaagcgaatgtgcaacc
aagaggaaattgatcaaagaccctggggagggtgagattagaattttcaagtttctttcc
aagtatgtaaaggatccaatttctgccaggaagttcatcgacattttgctcccatttttg
tcaaagggagttcaaagttctgatgtctgtcgtgaatctgtacaagtcatacaggggatt
ataccaatactaggaagtgaaattacaacaacaatcctgaatggtatttctccgttgttt
gtttctggtgatcgagatttgcgcacatctctctgtgatcttcttgaaactcttgcccaa
gttgatccctccgtaactgttgtggcaaaacttgtgtgtgacttgaatgcaacctctact
gtggaaattggagcccttgattatgacattataatcaactcttatgaaaagatcagtgca
aatagtgcaaacttcttctatactgttccggaggatcaagcattactgattttgtctcat
tgtgtatacgatatgtcatctacagagttaattttaaggcatagttcctatggattgtta
ctctcgtttctcgaatttgctggtgaagttctcagtcatgtagaaaatgatctagacacg
cctcctccgaagaaaattggtgatcattggacagtaggatccattaagcgcataataaac
aagtttctcttgaagcatctcgggcatgcaatgaagggagatgcttctttgaaaaaggaa
tggattaatttactacgagaaatggtgatgaaacttcccaatatgggcaacctggattcg
ttaaaggttctctgtgatgaagacgttgaaatagattttttcaacaatatcattcattta
cagaggcacagaagagcaagagctttggcacgcttcaggaacgctatcggttctaactct
atgccagagggaataataaataaagtttttgtacccctcttttttagtatgctttttgaa
gttcaagaaggaaagggtgaacatgttagagatgcatgcatagatgcccttgcttcggtt
tctggccaaatgaagtgggattcttattattctctgttattgagatgcttcaatgagata
aacttgcatcccgataagcagaagagtttagtacggctaatttgctttattttagaccag
ttccatttttcagccactgcatcctcttgtgacaatccttctgattccgggaccgttgag
tcaagttctttgattacacttagtaagtgtagtggctcttctgtgctgtctgagatacaa
atttgtcttcagaaaactgtgctgccaaagatacagaagttactggaatccgattctgat
agggttaatgttaacgtcaacctcgctgcacttaagatattaaagttgcttcctggagac
ataatggactcgcagctccctactattgtacatcgcgtatcaaactttctgaagaatcgt
ttagaaagcatccgtgatgaagctaggtctgctttggctgcatgtttgaaggagctgggg
ttagaatacttgcagtttctagtcaaggttcttcggaccacattaaagcgaggatatgaa
atgcacgtgttggggtacaccttaaatttcattttatcgaagtttctctcggttcctgtt
tgtggcaagctggattattgtttggaagatctcctatcgatagttgagaatgatattctt
ggagaagttgccgaggaaaaagaggtggataagattgcctcaaaaatgaaagaaactagg
aagaggaagtctttcgaaacactacaattaattgctcagagcattacattcaaaacccat
gctttgaaagtattgtcacctgttgcatctcacttgcaaaaccgaatgactcccaaaatc
aaagcgaaattggaaagcatgttgaatcacatagctgctggtattggatccaacccttct
gtagatcagactgacttgtttatttttctatttggtctcattgaagatgggattaaaaat
aaggatgagaactcaacaatttcgaacactcctaaaaatcgtaaaaagggtgcaggtgga
aaaaatgtttcctcagtccgagttaaacatgtaaagtcattaggttcacatcttataatt
gttttcgctctcgggatactgcataaaagtgtgaagagcttaaagaatgccaaaaatgat
gtaaaagtattagcaatgcttgatccttttatcccgttgcttggaaactgcttgaattcc
aaatacgaagatgttttgtctgcaactcttaggtgccttactccacttgtaagattgcct
ttaccatccatcgaatcccaagttgatacgataaaaggttccctgtttgatatagcccaa
agtactataaatgtcgacagttctttaatgcagtcttgcctacgattgttgactgttata
ttgggaggaactaataccacactttcctctgaagagctacatttactaattcagcttcca
ctttttgttgagctagaaagaaatccctcttttgttgcactttcacttttaaaggcaatt
gttagccgtaagctagttgttccggaaatatatgatcttgtaactcgagttgcggaattg
atggttaccagtcaagtagaaccaatacgtcaaaaatgcagtcagattctgttgcagttc
ttactcgattatcgtctttcagggaaacgcctgcaacaacatttggattctctgctttct
aatcttaggtatgaacacccaagtggaagaaaagctgcactcgaaatgcttcatgcagtt
attgttaagtttccgaaaagtgttgtggatgatcaatcacaaacactatttattcatttg
gtagcttgcttagctaatgatctagatagtgaggttcgtgctatgagtggtgcagctatt
aagcgtctcatcggttgtgtaagtgcacattcacttcattctattcttgagagcagtcta
tcttggtatatggatgagaagccaaaactgtggagtgctgcagcacaggtcttgggatta
ttagttgaagggcaaaagaaaggatttgaaaaacacatcagaagtagtgtcttgccaaga
gctagaactattttgaaatctgccatcgatgactataatgacagatcacaagattattct
gatgaggctactattccattctggaaggaggcatactattcattgataatgttagagaaa
attctgcatgagtttcatgatttatgctttgaagaggatcttgaggatgtatgggatgca
atatgtgaacttctcttgcaccctcacacatggttacgagacatttcgagtcgcctagta
gcattttacttctctgccgtgacagaactatgcaagaagaatcgtgaactttcccttcaa
agttatttccttacgaggccaagtagactattcatgattgctgtttccacttgttgccaa
ctgaagacaaaagtcagcgatgatgccgcaagcaacctgattgtacaaaatatcgttttt
actgtttgtggtgtgcactctttgatgggacaaccggagcacgaacaacctcaaagattt
tggtctaccctcgagcagcacgagcaaggtcattttcttaaagcattaaagttgattgat
tcggggaaagtgcaaacctcgtttctgtctcttactcttgaagacaatggacattctaag
gccctcaggaacttacttatctccactatgctaaaaaagatgggaaaaatcgcccttcaa
atggaatctattcagatgaaaattgtcttcaatagttatggcaagattttttctcaattt
tccgatgaagaccgccaactttatgcatatgaaatactcctacccttgtataaagtttgc
gaagggttcgctggaagactcgtatctgatgatatgaagcaactagcacaagaagtatgc
gaccgtgttagacaaatgttgggcgtccaaacgtttgtgcaagtctacagcgagatcaga
aaaatgctgaagacaaaacgagacaagagaaaacaagaagagaaaatcatggctgtagtt
aatccaatgcgaaacgcaaagaggaaactgaggatcgctgctaaacatcgtgcccacaag
aaaaagaaaataatgacaatgaaatacgggcgatgggtgtag
DBGET
integrated database retrieval system
