Cannabis sativa (hemp): 115722869
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Entry
115722869 CDS
T08987
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115722869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csav04121
]
115722869
Enzymes [BR:
csav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115722869
Ubiquitin system [BR:
csav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
115722869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
Nop14
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
Tim54
SDA1_dom
RNA_pol_Rpc4
Motif
Other DBs
NCBI-GeneID:
115722869
NCBI-ProteinID:
XP_030508075
LinkDB
All DBs
Position
9:complement(58936413..58939810)
Genome browser
AA seq
407 aa
AA seq
DB search
MTRFSVSGDEEEENGGKRVAFPSSSSRLKRHRSVQSECSYSSSEDEHPFGYDLPFEPLRE
PQIEDINVARGEEEREDINVTGGEEEIEEEEEEQEEEEEVEEEEEEQEEEQEEEQEREQE
ESNVSEHDFSLLGRSPFSLLGRSPTPTDGSVSITRDKSIPVVLTDPDVLDCSICFEPLTI
PVFQCENGHTACSTCCTKINNKCPSCSFPIGYNRCRAIEKVLESVKIRCSNASYGCKETV
SYNKKKEHETSCTYSPCHCPIRSCDFISSSTELYHHFRSQHSISTGVRSFDYNLTFSVTL
LNCVDFVVLQERKDNVIFILNSTFKTFGYMVWISCIWPCPFKGFWYEILAKTDETTLRLE
SFTSCNQQRVVTTGPSSGYLLIPMNLFGCRGQLELAICIHSLPVAAV
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgacgagattctctgtgtctggagatgaagaagaagaaaatgggggcaaacgcgtagcc
tttcccagtagtagttcaagactgaaacgacaccgttctgtgcaaagcgaatgctcctat
tcctccagcgaagatgagcacccttttggttatgaccttccttttgaaccacttcgagaa
ccacaaatagaagacataaatgtagcaagaggtgaagaagaaagagaagacattaacgta
acaggaggtgaagaagaaatagaagaagaagaagaagagcaagaagaagaagaagaagta
gaagaagaagaagaagaacaagaggaagaacaagaagaagaacaagaacgtgaacaagaa
gaaagcaatgtttccgagcatgatttttcattactgggtcgatctcctttttcattactg
ggtcgatctccgactcctacagatggttctgtttcaatcaccagggacaaatcgattccc
gttgttttgaccgatccagatgttcttgattgctctatatgctttgagcccttgaccatt
cccgttttccagtgtgagaatgggcatacagcttgctctacctgttgcactaaaattaat
aataaatgtccttcctgctcttttcccatcggatataaccgttgccgagcaatcgagaag
gttcttgaatctgttaaaataagatgctcaaacgcttcgtatggttgtaaagaaacagtg
agttacaacaagaagaaagagcacgaaacgagttgcacttactctccatgccattgccct
attcgtagctgcgacttcatctcttcatccacagagttataccaccacttcagaagtcaa
cactcaatctctactggcgttcgttcattcgactacaacttgactttttctgtcaccttg
ttaaattgtgttgatttcgttgttcttcaagaacgaaaggacaatgtcatatttatcctt
aactcgactttcaaaactttcgggtacatggtctggattagttgtatatggccttgccca
tttaagggcttctggtacgaaattctggccaaaaccgatgaaaccactcttcgattagag
tctttcacgagctgcaatcagcaacgggttgttactaccggtccatcgtcgggttaccta
cttattcccatgaatctttttggttgtagaggccaacttgaattggctatatgcattcat
tcacttcctgttgctgctgtttaa
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