Cannabis sativa (hemp): 115722995
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Entry
115722995 CDS
T08987
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115722995
03036 Chromosome and associated proteins [BR:
csav03036
]
115722995
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
115722995
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115722995
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
115722995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
ResIII
AAA_19
AAA_22
PhoH
DEAD
Helicase_RecD
UvrD-helicase
AAA_16
Mov-10_helical
SLFN-g3_helicase
LTD
AAA
NPHP3_N
ATPase_2
SNF2-rel_dom
AAA_5
AAA_7
HipN
Motif
Other DBs
NCBI-GeneID:
115722995
NCBI-ProteinID:
XP_030508249
LinkDB
All DBs
Position
9:12789770..12795162
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AA seq
872 aa
AA seq
DB search
MSKVDDWGDECSVIGDKGEVGFIDYEDDRSVCSYNPEEEGPIIVSVPFPFVNGKPRSIFA
GETTSDLITIRNTTPEPVDLWGVKIYASTPEDTFTISLMEPPRADSDVKAIQAFLESHSL
EDRVLQPGETLTLWLSCKPKEVCMHTGIVHFDIDNETIERVVFLLADDKISHTLASRNPY
SKNIRKKKQFTVDSYVTAPRPSRGTRDFVRNRLPRYDIPSDIKELLQENQVPDCILEGLT
SRRNYSTFFKTLIIMEELQLEEDMRSYDMENVYFRRKGSQFLSLEVLGLAERRPSLVHGD
IIFTKLVFEDAGSPSYQGCIHRVEADEVHLKFAPEFHLRHRDDNRYNVQFTYNRINMRRL
YQAVDASTEVEKSFLFPSEACERRQIIRKPLVPISCALNEEQTCSIEMILGCEGAPPYVI
HGPPGTGKTMTVVEAILQLYKTQRHARILVCAPSNSAADHVLDKLIYEKGVKLKHSEIFR
LNASARPYEEMNPDYIQFCYFAENVFKCPPLDALRYYRIIVSTYMSASLLFSEGIKRGHF
SHIFLDEAGQASEPETMISLANLSSKNTVVVLAGDPLQLGPVIYSKDAERYGLGKSYLER
IFESELYNDMDENYITKLVRNYRCHPEILHLPSLLFYNEELIPCRDRRSSFMEKVDFLPD
REFPVLFIGIQGLDEREGSNPSWFNRFEASKVVEIIRKLTAHGDLEDEDIGVITPYRQQV
LKLKKAFEGLEMTNIKVGSVEQFQGQEKEVIIVSTVRSTIKHNEFDKNHCLGFLSNPRRF
NVAITRAISLLIIIGNPHIICKDTYWNMLLWRCIDNNSYQGCPPPERQEEEFFDEEPVQE
YGSLDVVQGEEPSQSELPKPGTDEAEWSDGWK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagttgatgactggggggacgaatgctctgtcattggagataaaggagaagtt
ggtttcattgactatgaagatgacaggtctgtttgtagttacaacccagaggaagaaggt
ccaattattgtttctgttcctttcccatttgtgaatggaaagcctcgatcaatttttgct
ggagaaacaacttcagatttaattacaataaggaacacaactcccgaacctgttgatctc
tggggtgtaaagatttatgcttcaaccccagaagatactttcacaatttccctgatggag
cctccgcgggcagattctgatgtgaaagccatacaagcattccttgagtctcattccttg
gaagacagggtgcttcagcctggtgagactttgactttgtggctctcttgcaaacccaag
gaagtgtgtatgcacacaggaatagttcattttgatatcgataatgaaactatagaaaga
gttgtttttctcttggcggatgataagatttctcatactcttgcatccaggaatccttat
tcaaaaaacataagaaagaaaaaacagtttactgtggattcatatgttacagctccacgt
ccttcaagaggaactcgcgactttgtcagaaataggcttccacgatatgatattccaagt
gatattaaagaacttctacaagaaaatcaggtccctgattgtattttagaggggcttact
agtagaagaaactattctactttctttaaaacattaattattatggaagagctacaattg
gaggaagacatgaggagctatgacatggagaatgtttatttcaggaggaagggaagccaa
tttttgtcccttgaagttctcgggcttgctgagaggagaccatcactagtccacggggat
ataattttcactaagcttgtcttcgaagatgcagggagtccctcatatcagggttgtatc
caccgagttgaggctgatgaagtgcatctgaagtttgccccagaatttcatttacggcat
agagatgataatcgctataatgtacagtttacatataaccgaattaacatgagaaggtta
tatcaagctgttgatgcttcaacagaagttgagaagagctttttgttcccatctgaagcc
tgtgaaaggaggcagattataaggaagccacttgtccccatatcttgtgctcttaatgag
gaacaaacctgttccattgagatgatacttggctgcgaaggagcaccaccttatgtgatt
catggtcctccaggcacaggcaagacaatgacagttgtggaagcaatccttcagctctac
aaaactcaaagacatgctcggattcttgtgtgtgcaccttctaatagtgcagcagaccac
gtactggataaactcatttatgaaaagggtgtaaaacttaaacatagtgaaatattcagg
ctcaatgcatctgctcgtccttatgaagagatgaatccggattatattcagttttgctac
tttgctgaaaatgtctttaaatgtcctcctttagatgcccttcgatactataggatcatt
gtatccacatacatgagtgcctctcttttgtttagtgaaggtataaagaggggtcacttc
tctcacattttcttagatgaagctgggcaagcttcagaacctgaaacaatgatttcacta
gcaaatctctccagcaagaatactgttgtagttcttgccggtgaccccttgcaattaggt
ccagttatatactccaaagatgcagaaaggtatggtttaggaaagtcttacttggagagg
atatttgaatctgagctttacaacgatatggatgaaaattatataacaaagctagtcaga
aattacagatgtcatccagaaattttacatctaccctcattactgttttacaatgaagaa
ttgattccatgtagagatagaagaagttctttcatggaaaaggtggactttcttccggac
agagaattccctgttcttttcattggcatccaaggcttagatgagagggaaggaagtaat
ccatcctggtttaatcggtttgaggcaagcaaagtggttgaaatcataagaaaattgaca
gcacatggggatttggaagatgaagacattggggtaataacaccatatagacagcaagtg
ctcaaactaaagaaagcttttgaaggtttagagatgactaacataaaagtgggaagtgtt
gagcaattccaagggcaagaaaaggaagttatcatagtatctactgtccgatcaacaatt
aaacacaacgaatttgacaaaaaccactgcctgggatttttgagcaatccaagaaggttt
aatgtggctattactcgtgctatatctttgctaattataattggaaatccacatatcatc
tgtaaggatacatactggaacatgcttttatggcgttgcatagacaacaactcgtatcaa
ggctgtcctccacctgaaaggcaggaggaggagttttttgatgaggaacccgtgcaagaa
tatggatcgctcgacgttgttcagggtgaagagccctcacaatcagagcttcctaaacct
ggtactgatgaagctgaatggtctgatggatggaagtga
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