Cannabis sativa (hemp): 115724153
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Entry
115724153 CDS
T08987
Name
(RefSeq) uncharacterized protein LOC115724153 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115724153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115724153
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115724153
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115724153
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF4407
Motif
Other DBs
NCBI-GeneID:
115724153
NCBI-ProteinID:
XP_030509476
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Position
9:complement(58652598..58662165)
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AA seq
892 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVCLSVSASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLG
QQPKTDPKEKAKAETRDWLNNVVSELESQIDNFEAEIEGLTVKKGKARPPRLVHLEESIT
RHKAHIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFCDVDELYISLPLD
KVEALEELVTIAPSSLVKAAPILGLKSLTVPATQIPATVSSTHQQTTSVQEPVEEPTSQE
SAVDTVAKTPPPKSSVISSSTATTPAGSHTHTASAPVNIPTHNLAGVSLGSPNLQGSSSV
RVTESAGATISSPVSLSTSVKEEEIGSFPGRRSSPSLTDTGLGRGIGRGSLSSQPSSSIP
INSGNVNPGSSTLGVVPSDMTKRNILGGDERVGSSGMVQPLVSPISNRMFLPTKADGTGS
LDSSNVSDAAALAGRVFSPSGVSSMQWKTGAEPGQFRGRTEVAPDLREKYLQRLHQVQQG
HSNMIQTLTGGNHKPFSAQQPNPLLQQFNSQNPSVPSQAGLGLGVQNSGIGPVTSSTLQQ
QQTSSIHQPSNPSVLVSSGTKESELGHAKVDEQQQQNLPDDSAVDSTAASSGIAKNLMNE
DDMKAPYAIDSPTGVSGSLTEPAQGPRDIDLSPGQPLQANQSSGSLGVIGRRSVSDLGAI
GDNITGSTAMSGALHDQSYNVQMLEAAYYKLPQPKDSERARSYNPRHPASTPPSYPQVQA
PIVNNPAFWERLGLEPYGTDTLFFSFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH
EEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagtcggaagctccagggcgagatcgaccgcgttctcaaaaaggtccaggaa
ggcgttgatgtctttgacagtatttggaataaggtttacgatacggacaatgctaatcag
aaggagaagtttgaagctgatttgaagaaggagattaagaagttacaaaggtatagagat
caaatcaagacttggattcagtccagtgagattaaggataagaaggtctgtttgtctgtt
agtgcctcttatgagcaggccctcgttgatgctcgtaaacaaatcgaacgtgaaatggaa
agatttaagatctgtgaaaaggaaaccaaaactaaagcattttctaaagaagggttggga
caacaacctaaaacagatccgaaagagaaggctaaagcagaaacaagggattggttaaac
aatgtggtttctgagttagaatcacagattgacaactttgaagctgagattgaaggactc
actgttaagaaaggaaaagcaagaccacctagattggtccatttagaggaatctattact
cgacacaaggctcatattatgaagttagaactgatattgagactgttggataacgatgaa
ttgagtccagagcaggtcaatgatgttaaagacttcttggatgactatgtggagcgtaac
caggaagactttgatgagttctgtgacgttgatgagctttatatttcattaccattggac
aaggtggaggcactcgaagaacttgtcacaattgcaccttctagtcttgttaaggctgca
ccaatccttggattgaagtctttaacagtaccagcaactcaaattcctgccactgtatct
tccactcatcagcaaactacttctgtccaagaaccagttgaagagccaacttcccaggag
agtgccgttgatacagtcgcaaaaactccgcctcccaaaagtagtgtgataagttcttca
actgcaaccactccagctggaagtcatactcatacagcttcagcacctgtgaatattcca
actcataatctggctggtgtttcgcttggttctccaaacctgcaaggttcaagttctgtt
agggttactgagagtgctggggctactatatcttctcctgtaagtttatctacatctgta
aaggaagaagaaataggaagctttcctggtcgcagatcatctccatctcttacagacact
ggacttggaaggggcattggtagaggcagtctttcaagccagccttcatctagcatccct
attaattctggtaatgtaaatcctggtagtagcacccttggtgttgtcccatctgacatg
accaagagaaacattttgggaggtgatgagagagttgggagcagtggcatggtgcaacct
cttgtttcccctataagtaataggatgttcttgcctacaaaggctgatggaacaggctca
cttgattctagtaatgttagtgatgctgctgcattagctggcagagttttttccccatct
ggtgtttctagcatgcaatggaagacaggagctgaaccaggacaatttcgtggaagaact
gaagttgcaccagatctgagggagaaatatttgcagcggctccatcaagtgcagcaaggc
catagtaacatgattcaaacacttaccggaggaaatcataagccgttttcagcacaacag
ccaaatccactgttgcaacagtttaattctcaaaatccatctgtcccctctcaagccggt
ctgggacttggagttcagaattcaggcattggacctgttacttcttccacgctgcaacag
cagcagacgagttccatccatcaaccatctaatccatccgtgttggtttctagtggcaca
aaagaatccgaacttggccatgcaaaagttgatgagcagcagcaacagaatttacctgac
gattcagccgttgattctactgctgcaagttctgggattgcaaagaatcttatgaatgag
gatgacatgaaagctccatatgcgattgattctccgacaggagtttctggctccttaaca
gagccagctcaagggccaagagatattgatctctctcctggacaacctttacaggccaat
caatcttccggtagcttaggtgttattggtagaagaagcgtttctgatctgggtgccatt
ggtgacaatattaccgggtcaactgcaatgtccggggcattgcatgaccaatcatataat
gttcagatgcttgaagctgcttattacaaacttccacaacccaaagattctgaacgtgca
aggagttataatccgagacaccccgcaagtactcctccaagttaccctcaagtacaggca
ccgattgttaacaatcccgcgttctgggaacgattaggtcttgaaccttatggaactgac
actcttttcttctctttttactatcaacagaatacatatcaacaatatttagccgcaaaa
gaattaaagaaacagtcgtggagataccacagaaagtacaacacatggtttcagcgacac
gaggaaccaaaagttgctacagatgaatatgaacaaggaacatatgtctacttcgacttc
catattgccaatgatgatttacaacatggatggtgtcagcggatcaagacagagttcacc
ttcgagtataattatcttgaagatgaacttattgtatag
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