KEGG   Cannabis sativa (hemp): 115724445
Entry
115724445         CDS       T08987                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03013  Nucleocytoplasmic transport
csav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115724445
  09122 Translation
   03013 Nucleocytoplasmic transport
    115724445
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csav03019]
    115724445
   03041 Spliceosome [BR:csav03041]
    115724445
Messenger RNA biogenesis [BR:csav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     115724445
Spliceosome [BR:csav03041]
 Complex C
  Other components
   EJC/TREX
    115724445
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    115724445
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd DSE1_N eIF2A Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_IFT140_1st WD40_RFWD3 Tricorn_2nd WD40_MABP1-WDR62_1st Beta-prop_DCAF12 WDR90_beta-prop_4th TRM82_WD Beta-prop_IFT80_2nd Beta-prop_NUP159_NUP214 B-prop_COPA_B_2nd PAC11 CFAP251_N TP_0598_N Beta-prop_Nup120_160 Beta-prop_ACSF4 Beta-prop_WDR41 WD_LRWD1 DUF7099 WDR93
Other DBs
NCBI-GeneID: 115724445
NCBI-ProteinID: XP_030509592
LinkDB
Position
6
AA seq 315 aa
MAEDSVPWKTLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKAKDI
ELKGHTDSVDQLCWDPKHAELIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG
THIAVGNRDDELTILDVRKFKSIHKRKFNYEVNEIAWNMKGDMFFLTTGNGTVEVLSYPS
LRPLDTLMAHTAGCYCIAIDPTGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS
FNHTGEYIASASEDLFIDISNAQTGKTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ
ADEGVFRIFGFESGA
NT seq 948 nt   +upstreamnt  +downstreamnt
atggcggaggactcagttccatggaagactctacacagcagagagtaccaaggtcacaag
aaaaaggttcattccgtggcttggaattgcaccggaactaagctcgcctccggttccgtt
gatcaaactgctagggtttggcatatcgaaccccatggccatggtaaagctaaagatatt
gagctaaagggacacactgatagtgtggatcaattatgttgggatcccaaacatgctgaa
ttaattgcaactgcttcaggagataagactgtccgtctatgggatgctcgtagtgggaaa
tgctcacaacaggcagaacttagcggggagaacattaacatcacttacaaacctgatggc
acgcacatagctgttggcaatagggatgatgaattaacgattttggatgttcgaaaattt
aagtcaattcataagcgcaagtttaattatgaggtaaatgagatagcttggaacatgaag
ggtgatatgttctttctaacaactggaaacggtactgtcgaagttctatcatacccatct
cttcgaccacttgacactcttatggcccatacagccggttgttattgcattgcaattgac
ccaaccggaagatatttcgcggttggaagtgctgattctttagtcagtttgtgggatatc
tcggaaatgctttgtgtgagaacatttacgaaactcgaatggcctgtaaggacaataagc
ttcaaccataccggtgaatatattgcttcagctagcgaggacttgttcatcgacatatca
aacgctcaaactggaaaaacagtccatcaaattccttgtcgggccgccatgaatagcgtc
gagtggaatcccaagtacaatttactcgcatatgcaggagatgacaagaacaaatatcaa
gctgatgaaggtgtttttcgaattttcgggtttgaaagtggtgcctga

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