Cannabis sativa (hemp): 115724516
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Entry
115724516 CDS
T08987
Name
(RefSeq) transcription initiation factor TFIID subunit 6 isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115724516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115724516
03036 Chromosome and associated proteins [BR:
csav03036
]
115724516
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115724516
Coactivators
SAGA/TFTC/STAGA complex
115724516
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115724516
STAGA complex
115724516
TFTC complex
115724516
SAGA complex
115724516
SLIK complex
115724516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
115724516
NCBI-ProteinID:
XP_030509672
UniProt:
A0A803QCD6
LinkDB
All DBs
Position
6:complement(27630727..27636650)
Genome browser
AA seq
539 aa
AA seq
DB search
MSVVPKEAIEVIAQSIGITNLSPDVALALAPDVEYRVREIMQEAIKCMRHSRRTTLTTED
VDSALKLRHVEPIYGFASGDHLRFKRAAGHKDLFFIDNKDVEFKDVVDAPLPKPPLDVSV
SAHWLAIEGIQPAIPENAPVEALAASSDGKRTESKEDGLSIDIKLPIKHVLSRELQLYFD
KVTELTANRPGFTIFREVLISLATDSGLHPLVPYFIYFIADKVTQNMNNFPLLFALMRLA
RSLLQNPSIHIEPYLHQLMPSVVTCLVAKRLGNRVSDNHWELRNFAANLIASICKRFGHV
YHNLQSRVTRTLLHAFLDPTKALPQQYGAIQGLAALGPSVVRLLVLPNLEPYMQLLEPEM
LLEKQKDKMKRHEAWRVYGALLCASGQCMHDKLKKFRSIFLPPSRATLKSNGKIATVKTN
KRKASADNSMQQPPFKKIATDGSMGGMAINSMQLQTDMQGGFSTGIVASQGVISSMSRSL
TNESLPTRELGGQMTKKSSVLAQAWKEDMDAGHLLASLFEIFGESVFSFTPKPELALFL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgtgccgaaggaagcaattgaggtcattgctcaaagcattggcattaccaat
ttgtccccagatgtggccctggctctggctcctgatgttgagtaccgggttcgtgagatc
atgcaggaggcaattaaatgcatgcgccactctagacgcactactcttactactgaggat
gtggatagtgcactgaagttaagacatgttgagcctatatacggttttgcttcgggcgat
catctgcggttcaagagagctgctggacacaaggatttattcttcattgataacaaggat
gtggagtttaaagatgtagttgatgcacctttacccaaaccaccacttgatgtatcggtt
agtgctcattggctggcaattgaaggcattcagcctgcaattcctgaaaatgctccagtt
gaagcacttgcagcttcctctgatggcaaaagaactgagagtaaagaagatgggctttct
attgacattaaattacctattaaacatgttctgtcaagggaacttcagctttacttcgat
aaagtcacggagcttacagcgaacaggcctggctttaccatttttagagaagtgttgatc
agcttggcaacagattccggacttcaccctttagttccttattttatttacttcattgct
gataaggttacacaaaatatgaataattttcctctcctatttgctttgatgcgtcttgcc
agaagtcttcttcaaaatccaagtatacatatagaaccttatcttcaccagttaatgcca
tctgtagtcacatgccttgttgctaaaagacttgggaatagggtttctgataatcattgg
gagctgagaaactttgctgcaaacctgattgcttcaatttgcaaaagatttgggcacgtt
tatcacaatctgcagtcgcgcgtgactagaactctgcttcatgctttcctggacccaaca
aaagcattacctcagcaatatggagctatccaaggtctagcagctcttggtccaagtgtg
gttcgactgcttgttctaccaaatctcgagccatacatgcagcttcttgaaccagaaatg
ctactcgagaagcaaaaggacaagatgaagaggcatgaagcttggcgtgtatatggagcc
ttgctgtgtgcatctggtcagtgcatgcacgataagctgaaaaaattccgtagcattttt
ttgcctccttctcgtgccactttgaagagcaatgggaagattgcaacagtaaagacaaat
aaacgcaaagcaagtgcagacaattcgatgcagcaaccgccattcaagaaaatagccaca
gatggaagcatggggggcatggcgattaactccatgcaattgcaaactgacatgcaaggt
ggattttcaactggcattgtggcttcccagggtgttatatcatcaatgtctcggtcgtta
acaaatgaaagcttgccaacaagagagttgggaggtcaaatgacaaagaaatcttctgtt
cttgctcaggcttggaaagaggatatggatgcaggtcatttactggcgtcattgtttgaa
atttttggtgaaagtgtgttctcctttactcccaaacctgagttagccctcttcttgtga
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