Cannabis sativa (hemp): 115725755
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Entry
115725755 CDS
T08987
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03022
Basal transcription factors
csav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115725755
09124 Replication and repair
03420 Nucleotide excision repair
115725755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115725755
03400 DNA repair and recombination proteins [BR:
csav03400
]
115725755
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115725755
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115725755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
115725755
NCBI-ProteinID:
XP_030511221
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Position
6:complement(760901..766896)
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AA seq
603 aa
AA seq
DB search
MSTGQVIKRAKYKTSVKDPGTPGLLKMNERKFSFSPHDPTSNVKLNVDFVHIKGHKHTKE
GSNKPPWLNLPHDQGGSYIFEFESFADLHVCREFVGNCLAKAAEAAKVVSAPKVASDKVA
VTFSDEQLSTADLELRMKLLREDSELQKLHKQFVIGGILTESEFWATRKKLLDGDSNRKL
KQRIGFKSTMILDTKPMADGRTNKVTFNLTPEIKYQIFVLKPAVHRAFLNLVPNKMSEKD
FFTKYFKAEYLISTKNAVAAAAEAAEDDELAIFLKEDDILAQEARRKIRRVDPTLDMEAD
LGDDYSHLPDHGIFRDGTKEVSEPQSEHYKRTLSQDLNRQGAVVLEGRTIDMDLEDPRSV
AEALVRSRQVETDEDVTQERLDRLSRMTEIEDLQAPHDHPFAPLCIKDPRDYFDAQQANA
LKTLDDIRNKSEQKKCNLSIGEAYHSLRDSISKIKTLGLSNPIVKPEVALSVFNGLTQNI
SSTRYQLGKNPHESILDSLPSTTKDELLHHWMSIQELLRHFWSSYPITTTSLHTKVTRLK
DAMSSIYRQLEEIKESVPSDFRHQVSLLVRPMHQALDAAFQHYDTDQQKRSSSAKIGEGP
NGY
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactgggcaagtgattaaacgagctaaatacaagacctcagtcaaggaccctggc
actcctggtcttctcaagatgaatgaaagaaagttttcattcagtcctcatgatcctact
tctaatgtaaagctaaatgtggattttgtacacattaaaggtcataaacacactaaagag
ggttcaaataaaccaccttggcttaatctcccccatgatcagggtgggagttacatattt
gagtttgaaagctttgctgatcttcatgtatgccgagaatttgtgggtaattgccttgca
aaggctgcagaagctgcaaaagttgtttctgctccgaaagttgcttccgataaagttgca
gttacattttctgatgaacaactcagtacagcagatttggagcttcggatgaagctattg
cgagaagatagcgaattgcagaagcttcataagcaattcgtgatcggtggtatcttaaca
gaatcagagttctgggcaacaagaaagaaattgcttgatggcgatagcaacagaaagtta
aaacaacggattggtttcaaaagtacgatgatattagacaccaaacctatggccgatggt
cggacaaacaaggtaacgtttaatttgacaccagagatcaaatatcagatttttgttctg
aaaccagctgttcaccgagcattccttaatctcgttcccaataagatgagtgaaaaggac
ttctttactaaatactttaaagccgagtacctcattagtacaaagaatgctgttgccgca
gcagcagaagctgcagaagatgatgaactcgccattttcttaaaagaagatgacatattg
gcacaagaagctcgccgaaagatcagaagagttgatccaactttggacatggaagcagat
ctaggagatgactattcccatcttccagaccatggaatctttcgcgatggtaccaaagaa
gtaagtgaaccacaaagtgagcattataaaaggactttgtctcaagatcttaaccgtcaa
ggtgctgttgttcttgaaggaagaactatagatatggacttggaagatccacgatcggtt
gctgaggcactagtacgatcgaggcaagtagagaccgatgaggatgtgacacaggagaga
ctcgataggctttctcgtatgactgaaatagaagatcttcaagcacctcatgatcatcct
tttgctccactctgcatcaaggatcctcgagactattttgatgcacagcaagctaatgca
ctcaaaacattggacgatatacgaaataaatccgaacaaaagaaatgcaacctcagtatc
ggtgaagcttatcactcattgagggattccatatctaaaatcaagactttgggactgagt
aatcccattgttaaacctgaagttgctctttcggtttttaatggattgacccaaaatatc
tcaagcaccaggtaccaacttgggaagaatcctcatgagagtattctggacagtttaccg
agcacaacaaaagacgaacttctacaccattggatgtctattcaagagttactaagacat
ttctggtcttcatatccaattacaacaacgtctcttcatacaaaggtaactagattgaag
gatgccatgtcaagtatataccggcagctagaggaaataaaggagtcagtgccatcagac
tttcggcatcaggtttcgctcctagttcggccaatgcaccaggctcttgatgctgcattt
caacattacgacacagaccaacagaagagatcatcatcggctaaaattggagaagggcca
aatggatattag
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