Cannabis sativa (hemp): 133031653
Help
Entry
133031653 CDS
T08987
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133031653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
133031653
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133031653
Spliceosome [BR:
csav03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133031653
Complex B
133031653
Complex C
U2 SnRNP specific factors
133031653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
133031653
NCBI-ProteinID:
XP_060961122
LinkDB
All DBs
Position
X:12596248..12600111
Genome browser
AA seq
797 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERSQQAPQRLYVPPSSRAQGHDNYEDTDLDNIDYEEHDA
AAAADATKESGNGDEGNGGAEEEEEEEEVDPLDAFMEGIHEEMRSAPPPKPKEKAEKYKD
DEDDDPIESFLRAKKDVGLTLASDVLHAGYDSDEEVYAAAKAVDAGLVEYDSDDNPIVTD
RKKIEPIPALDHSSIDYEPFNKDFYEEKDSISGMSEQEVADYQKSLAIRVSGVDVPRPVK
TFEDCDFSSQLMSAIRKQGYEKPTSIQCQAFPIVLSGRDIIGIAKTGSGKTASFVLPMIV
HIMDQPELQKEEGPIGVICAPTRELAHQIYIECKKFSKTQGIRVSAVYGGMSKLEQFKEL
KAGCEIVVATPGRLIDMLKMKALAMSRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ
TLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP
AMIDAGDVLVFASKKATVDEIESQLALKGFKIAALHGDKDQSSRMDILQKFKSGIYHVLI
ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGE
LVNNLIAAGQNVSVELMDLAMKDGRYRSKRDARKGGGKKGRGRGGGGGGGGGGGGNRGVR
GVDFGLGIGYTPESNSSSSHAAPGRSAAVNSLKTGIMTQFKSSFVAASSTSQSQGSSNSS
SAPANKRPALRGFVSGGSIGGDNSYRAQTTYPSNYAPASGMTNSSSQNANDQNADQKNSE
SSSDRTRERRRRSGWDR
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaaattcggattcgaaggctttggcataaaccgccaaacgacttacaac
ttcgagcgctcccaacaagctcctcagcgattgtatgtgcctccatcttcgcgggcacaa
ggtcacgacaattacgaagacactgaccttgacaatatcgattacgaagaacatgatgct
gctgctgctgctgatgctaccaaggaaagtggcaatggtgacgaaggtaatggtggagct
gaggaggaggaggaggaggaggaagttgatccactcgacgcgttcatggaaggtattcat
gaggagatgaggtcggcgccgccgcccaagcctaaagagaaggcggagaagtataaggat
gatgaggatgatgatccgattgagagctttcttagggcaaagaaggatgtgggtctgacg
ctggcttcagacgtgcttcacgctggttatgattcggatgaggaggtctatgctgcggct
aaggctgtcgatgccgggttggtggagtatgattcggatgataatcctattgttactgat
aggaagaagattgagccaattccagctctggatcatagttcgattgactatgaaccattt
aacaaggacttttatgaggagaaagattcaatatcggggatgagtgaacaagaagttgct
gactaccaaaagagcttggccattcgtgtgtctggtgttgatgttccaaggccggtaaaa
acttttgaagattgtgatttctcttcgcaactcatgagtgctattagaaaacaaggctat
gaaaaaccaacatcaatacagtgccaagctttcccaattgtgctttctgggagggatatt
attggaatagcaaaaactggttcaggtaagacagcatcttttgtccttcccatgattgtc
catatcatggatcagccagaacttcagaaagaagagggtccaattggagtgatatgtgca
cccacaagagaattggcacaccagatatatatagagtgcaagaaattttcaaaaacacag
ggtatacgtgtctcagctgtttatggtggtatgtccaaacttgaacagttcaaagagctc
aaggcaggttgtgaaatagttgtggctacccctgggagactgatagacatgctgaaaatg
aaagccctagcaatgtctagggcaacttacttggtacttgatgaagccgaccggatgttt
gaccttggatttgaaccacagattagatctattgttggtcagattaggccagatcgtcaa
actctgctattttctgcaacaatgccgcgtaaagttgagaagttggctagggagatactt
actgaccctgtaagagttactgttggggaggttggtatggccaacgaggatatcactcag
gttgttcatgtgattccttcggacgctgagaagttaccttggcttcttgaaaaactacct
gcaatgattgatgcaggtgatgtcttagtgtttgcatcgaaaaaggccacagtggatgaa
attgagtcacagctggctctgaaaggttttaaaattgctgctcttcatggtgacaaagat
cagtcttcccgaatggatatattgcagaagtttaaatccggcatctaccatgtacttatt
gcaactgatgttgctgcccgtggtctcgacattaagtccatcaagtctgtggtgaacttc
gatattgcaagagacatggacatgcatgttcaccgtattggtagaacaggtcgtgctggt
gacaaagatgggactgcatacactcttataacacagaaggaggcaaggtttgctggtgaa
ttggtgaacaatttgattgctgctggtcagaatgtgtcagtggagcttatggatcttgcc
atgaaggatggaaggtatagatccaaacgcgatgccagaaaaggaggtggaaaaaaaggt
agaggaagaggtggaggtggtggcggtggcggtggtggtggtggaaatcgtggtgttcgt
ggagtagattttggtttgggtataggttatactcctgaatccaacagcagttcatctcat
gctgctcctggtcgatctgcagctgtaaattctcttaagacaggaataatgactcaattc
aagagtagctttgtcgctgcttcatcaacttctcagagtcagggttcaagtaacagttca
agtgcacctgcaaacaagagaccagcattacgtggctttgtctctggtggttcaattggc
ggtgataatagttatagagctcagacaacctatccaagtaattatgccccagcatcgggg
atgaccaactcctctagtcagaacgctaatgaccagaatgcagatcaaaagaactcagaa
agttcaagtgatagaactagagaaagacggaggcgctcaggttgggaccgttaa
DBGET
integrated database retrieval system
