Cannabis sativa (hemp): 133033300
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Entry
133033300 CDS
T08987
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133033300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csav03400
]
133033300
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133033300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
nSTAND_NTPase5
Tudor_KDM3B
Motif
Other DBs
NCBI-GeneID:
133033300
NCBI-ProteinID:
XP_060963998
LinkDB
All DBs
Position
Unknown
AA seq
1314 aa
AA seq
DB search
MSSSRRQTNGRSPLVNQQRQITAFFSKSPTSSSDQKLNNPTPKSKLKPVSSDQKRSPSPS
PVTPSPLQSKLKKPLLVIAASSPSSITSTSASDKPYGEEAVGKKIKVYWPLDESWYEGFV
KSFDKDQGKHLVQYDDAEEELLDLAKEKIEWVKQSAKKLKRLRRGSSLSMRKMIIDDEDE
AENLEDEEEGDSDGSGADDSSDEDWGKSGEKMVTENSEEEDMEMVLEDEDEKDEALRCKG
KPGVEGISKKRKIGGAVEFDSAKKSKGSKDVNKGGSKVSIMRTTPTDNAENAKCSNAVNA
DLSGDASERFSIREAKKLHFLGDERRDANRRRPGDPNYDPKTLFLPPIFVKSLSDGQRQW
WEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELGLQYMKGEQPHCGFPEKNFSVNVEKL
ATKGYRVLVVEQTETPDQLELRRREKGSKDKVVRREICGVVTKGTLTEGEMLSTNPDASY
IMALTESQNVGTQNVERNFGVCVVDVATSRVILGQFHDDSECSALSCLLSELRPVEIVQP
AKQLSLETEKVLLRHTRSPLVNKLVPGLEFWDTEKTIHEVKGIYERASDQSVSSSSSRKD
LKVKNSSTEEELSHLPDVLVELIRAGENGSYALSALGGTLFYLKQAFLDETLLRYAKFEL
LPSSGFCDLISKPFLVLDAAALENLEIFENSRNGDSFGTLYAQLNHCVTAFGKRLLKTWL
ARPLYNVESIKERQKAVASLRGVNLPLSFEYRKALSRLPDMERLLPRVFSISEANGRNAN
KVTLYEDAAKKQLQEFISALCGCELMVQACSSFGAILENVESRQLHHLLSSGIPHIDPVL
THFKDAFDWMEANDSGRIIPHEGVDIEYDSACKKVKEIESSLAKYLKEQCKLLGDTSIAY
VTVGKDTYLLEVPESLRGRVPRDYELRSSKKGFFRYWTPNIKKFLGELAQAECEKESSLK
SILQRLIGRFCEHHTKWRQLVSTTAELDVLISLAIASDFYEGPTCQPTILSSSTDEVPCL
SAKSLGHPVLRSDSLGKGSFVPNDVTIGGSGNPSFILLTGPNMGGKSTLLRQVCLTVILA
QLGADVPAERFELSPVDRIFVRMGAKDHIMAGQSTFLTELSETAMMLSSATHNSLVALDE
LGRGTSTSDGQAIAGSVLEHFVHKVQCRGMFSTHYHRLAIDYQKDPKVQLCHMACQVGSS
VGAIEEVTFLYRLTHGACPKSYGVNVARLAGLPNSVLENAAIRSTNFEAIYGKHRKPVNN
LSELSSAEKMALLVQKLNSIISNLKFEESMESIGVSSFIELQREARVLCEINSR
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttctcgtcgccagaccaatggcagatccccactcgttaatcagcaacgccaa
atcactgccttcttctccaaatcccctacttcttcttccgatcaaaagctcaacaatcct
actcctaaatctaaactcaagcccgtttcttccgatcaaaagcgtagccctagtcccagc
cctgtcaccccatctcctcttcaatcgaagctcaagaaaccccttttagttatcgccgca
tcttctccctcttctattacttcgacttcggcttccgacaaaccctacggcgaagaagct
gtcggaaagaagatcaaagtgtattggccgttggatgagagctggtacgaggggtttgtg
aaatcgttcgataaggatcaaggcaagcatttggtgcagtatgacgacgcggaggaggag
ttgttggatttggctaaggagaagattgaatgggtcaaacaaagcgcgaagaaactcaag
cgtttgcgtcggggttcttctttgagtatgaggaagatgattattgatgatgaagatgaa
gctgagaatcttgaagatgaggaagagggtgacagtgacggtagtggtgctgatgattct
agtgatgaggattgggggaagagtggggagaaaatggttactgagaatagtgaggaagag
gatatggaaatggtattggaagacgaggatgagaaggatgaagcattgaggtgcaaagga
aagccgggtgtggaaggtatatcgaagaagcgaaagattggtggagcagtagagtttgac
tctgctaagaagagcaagggtagtaaagatgtgaataaaggtggttctaaggtttctatc
atgcgaactacccctacagacaatgctgaaaatgcgaaatgttctaatgctgttaatgct
gatttatctggtgatgcttcagaaaggtttagcatccgtgaagctaagaagttgcacttc
ctcggggacgaacgtagggatgcaaataggaggcgacctggagatccaaactatgaccct
aaaactctttttttacctcccatatttgtaaagagcttgtcagatggccagagacaatgg
tgggaattcaagtcaaagcacatggacaaagttctgtttttcaagatgggcaagttttat
gaacttttcgaaatggatgctcacgtaggagcgaaagagctcggtttgcaatatatgaag
ggagaacaacctcactgtggatttccagagaagaacttttcagtgaatgttgagaaactg
gctacgaagggttatcgagttcttgtggtggagcaaacagaaacacctgatcagttggag
cttcgtcgcagggagaaaggatctaaagataaggttgtgagacgtgaaatatgtggagtg
gttacaaaaggaacactaactgagggggagatgttgtcaaccaatcctgatgcttcttac
ataatggcattgactgaatctcagaatgtgggaacccaaaatgtggagcggaattttggg
gtttgtgtagttgatgttgctaccagtagggttattcttggacagtttcacgacgattca
gagtgcagtgcattgtcttgtctcttgtctgagctgaggcctgttgaaattgtacaacct
gctaaacaacttagtctggaaactgagaaagtgctgctgagacatacaagatctcctcta
gtgaacaaactagttccgggcttggagttctgggatactgagaaaactattcatgaagtg
aaaggcatctatgaacgagcttctgaccaatcagtttccagttcttcaagcagaaaagat
ttaaaggttaagaattcttctactgaggaagaattgtctcacctaccagatgttttagta
gagctaataagagcgggtgagaatggaagctatgcactttcagctcttggtggaactctt
ttctatctgaaacaggcttttctggatgagacattgcttagatatgcgaaatttgagctg
cttccctcgtctggtttttgtgatcttatatcaaaaccattcttggttcttgatgcagct
gcactagagaaccttgagatttttgaaaacagtagaaatggagactcctttgggacactt
tatgcacaactgaaccattgtgtgactgcatttgggaagaggctactcaaaacatggctt
gcaagacctctatataatgttgagtccataaaggagcgccagaaggctgtggcaagttta
aggggtgttaatctacctttatcatttgaatatcgaaaagcattatcaaggttgccggac
atggagagactgctaccacgtgtgttctctattagtgaagctaatgggagaaatgctaat
aaagttaccctgtacgaggatgcagccaagaaacagcttcaagaatttatttcagctcta
tgtggttgtgaattaatggtccaggcttgttcttcgtttggcgccattttggaaaatgtt
gaatctaggcaacttcatcatttgctaagttctggaattcctcacattgatccagttctt
actcatttcaaggatgcctttgattggatggaggctaatgattcaggtcgtatcattcct
catgaaggagttgatatagagtatgattctgcatgtaaaaaggttaaggagattgagtct
agcttagccaaatacctcaaagaacagtgcaaattacttggagatacatcaattgcttat
gtcacagttggaaaagatacatacctattagaagtgccagaaagtttgcgtggccgcgta
ccccgagactatgagttgcgctcatccaaaaagggattcttcaggtactggacaccaaac
attaagaagtttcttggagagctagctcaagctgaatgcgagaaggagtcgtcactgaaa
agcattttacaaagattaattggacgtttctgtgagcatcatactaagtggagacaactg
gtgtcaacaactgcagagctggatgttttgataagtcttgctattgcaagtgacttttat
gaaggacctacttgtcagcctacaatactgagttcaagtacagatgaggtgccctgtttg
tctgcaaaaagtttgggacatcctgtcctgagaagtgattccttaggcaagggttcgttt
gtacccaatgatgttactattggaggttctggcaaccctagctttattcttctaactggc
ccaaatatgggtggaaagtcaactcttcttcgtcaagtttgcttaactgtaattttggcc
cagttaggagctgatgtgcctgcagaaagatttgagctttctcctgttgatagaatcttt
gttcggatgggtgccaaagaccatattatggcagggcaaagtactttcttaacagagctc
tctgaaactgcaatgatgctgtcatcagcaactcataattcattggtggcactggatgaa
cttggaagaggaacctcaacttcagatggacaagccattgctggatcagttcttgaacat
tttgttcacaaggtgcagtgtagagggatgttttctactcactaccatcgattagccata
gattatcagaaagatcccaaggttcagctctgccatatggcatgccaagttggaagcagt
gttggagctatagaagaagtaacatttctctataggctgactcatggtgcttgtcctaaa
agctatggagtcaatgttgcacgattagctggacttcccaactctgtccttgaaaatgca
gcaattaggtctaccaactttgaggctatatatggtaaacacagaaaaccagttaacaac
ttgtcggagcttagttcagccgagaaaatggcactattggtccaaaagctgaacagtatc
atctcaaatctaaagtttgaggagtctatggagagcattggagtcagcagcttcattgaa
cttcagcgggaagcaagagtactctgtgagataaattcgagatag
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integrated database retrieval system
