Cannabis sativa (hemp): 133038125
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Entry
133038125 CDS
T08987
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav00040
Pentose and glucuronate interconversions
csav01100
Metabolic pathways
Module
csav_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133038125
Enzymes [BR:
csav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
133038125
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
133038125
NCBI-ProteinID:
XP_060972161
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Position
5:7366491..7374810
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AA seq
418 aa
AA seq
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MAANAANNGGNNSFILGAKSSLFDVRTYGAKPNTDISQALSIAWKSACASPTQSVLFIPS
GVFYLKRAILQGPCKAPIKVQLQGTLRALNDLTGFKDEDGWVIFEHINDLTLMGGGTFDG
QGKSVWGKQCGRGKYCSKYPMVILLIIINYFLLLDKLLLPSYNYNLLKQNIRFDYITNSL
IQDITSLDSKQFHMNVLGCQNVTFLHVHVIANGNSPNTDGIHIGRSFMINITDVNIQTGD
DCISLGDGSKKITITKVTCGPGHGISVGSLGKYMNEQPVEGVFVRNCTLINTMNGLRIKT
WPNSFVGLASNIHFEDIIMENVGNPIYIDQEYCPWNQCNKAVPSKVQIKDVSFKDIRGTS
ATANAINFICSSGFPCQNVEVVNIDLRYNGKQGHITSQCKNIKPRILGIHNPTACLAS
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaatgctgcaaacaatggaggcaataacagtttcattcttggagccaaatct
tcactttttgacgtaagaacatatggtgcaaaacctaacacggacataagtcaggctctc
tcaattgcatggaaaagtgcttgtgcatcaccaactcaaagtgtattatttattccaagt
ggggtattctatttaaaacgagctatattacaaggaccatgtaaggctccaataaaggtt
caacttcaaggaacactgagggccttaaatgatctaactggtttcaaggatgaagatggt
tgggttatatttgaacatatcaatgacctaaccttaatgggaggtggtacttttgatgga
caaggtaaatcagtttggggcaaacaatgtggacgaggcaaatattgtagtaaatatccc
atggtaattcttttaatcataataaattattttctattattggataaattattgttacca
tcttataattataatttattgaaacagaatataagattcgactacatcaccaattcctta
attcaagatataacatcactggatagcaaacaatttcatatgaatgtgttaggttgccaa
aatgttacctttttacatgttcatgtaattgcaaatggtaatagtcctaacacagatgga
atccatattgggcgatcatttatgataaacataacagatgtaaatattcaaacgggagat
gattgtatttctcttggtgatggaagtaaaaaaataactattacaaaggttacatgtgga
cctggccatggtatcagtgttggaagccttggaaaatatatgaatgaacagcctgtagaa
ggagtgtttgttagaaattgtacattaataaatacaatgaatggattaagaatcaaaaca
tggccaaattcatttgttggattagcttctaatatccattttgaggatattatcatggaa
aatgtgggcaaccctatttatattgaccaagaatattgtccttggaatcaatgcaacaaa
gcggttccatcaaaagttcaaataaaagatgtgagcttcaaggatattcgtggtacttct
gcaacagcaaatgctataaactttatttgcagtagtggttttccatgccaaaatgttgaa
gttgttaatattgatcttagatataatggaaaacaaggtcatattacatctcaatgtaaa
aatatcaaacccaggatacttggaattcacaacccaactgcatgcctcgctagctaa
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