Candidatus Chlamydia sanziniae: Cs308_0519
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Entry
Cs308_0519 CDS
T10171
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csaz Candidatus Chlamydia sanziniae
Pathway
csaz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cs308_0519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csaz03400
]
Cs308_0519
Enzymes [BR:
csaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cs308_0519
DNA repair and recombination proteins [BR:
csaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cs308_0519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
DUF3638
nSTAND_NTPase5
AAA_19
RecG_dom3_C
ADDB_N
PhoH
Motif
Other DBs
NCBI-ProteinID:
ANH78689
UniProt:
A0A1A9HUM2
LinkDB
All DBs
Position
complement(572074..575334)
Genome browser
AA seq
1086 aa
AA seq
DB search
MAMDFDPINVIYPWSHELSQETLPVLIENVHSGALAFLAAKLFHDHSRPMVMITTPIRLD
NLFENLTTFLHQPPIEFPSSEIDLSPELVNIDAVGKRDQILYDLSQGKAPLFYITTLKAL
LEKTSSPKSTVQQHLELHVGDILDPETVIELCKNLGYVHVTLASEKGEFAYRGGIVDIFP
LSSPEPFRIEFWGEKIISLRSYNPSNQLSTGKVLEISISPANKERFTEELSHTLLDYFCE
PPLYLFDDLEILEDDFAAISGTLASLPKRFFPISYLYERAMSSKQIYCVEKKFPNIQALS
NEHITIEIFNRSIEARRFFIPFIYPTPIIENESNPLLTFLNYLQEYLPQQEEAVLKLAIY
STKTKSLKEARALAETFANNRTCIYEKTGNLSSSFALADTGFAAISLSEFASTKILRRQK
QRTYFSVDTEEVFVPVPGETIVHLHNGIGKFLGIEKKPNHLNIETDYLVIEYADKAKLYV
PSDQAHLISRYIGPTDKTTTLHNLNSSKWRRSRELTEKSLIIYAEKLLQLEAQRSTIQAF
VYPPHGEAIFKFDESFPYEETPDQLKAIDQIYADMMSTKLMDRLICGDAGFGKTEIIMRA
AVKAVCDGHRQVIVMVPTTILANQHYETFKQRMAGLPIQIAVLSRFSQAKVQREIFERVA
KGEIDILIGTHKLINKNLKFHNPGLLIIDEEQRFGVKIKDYLKERYPNIDCLTVSATPIP
RTLYMSLAGARDLSVITMPPLDRLPVSSFIVENNHETLCAALRHELLRGGQAYVIHNRIE
TLYGLAETIRNLLPEAHIGVAHGQMLSEDLSRIFKKFKDHQTNILVATALIENGIDIPNA
NTILIDHADKFGMADLYQMKGRVGRWNRKAYCYFLVTDLNRLSGPAAKRLAALNKQEYGG
GMKIALHDLEIRGAGNILGTDQSGHIGTVGFNLYCKLLKKAVATLKNHSKPLLLNDDLKI
EFPYNSRIPDTYIDTAFMRIEFYQKIGNAKSKEELEAIQEEMQDRFGSLPQAVSWLLALA
QIRLFALQHNICSIKGTANALYLQQYHSKIEQIKKTVPYALSPTPELLVVEVLACIQKAF
PLKSSK
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggatttcgacccaattaatgtaatctacccctggtctcatgaattatctcaa
gagactcttcctgttctcattgaaaatgtacattcgggagctttagcttttcttgcagca
aaacttttccacgaccattctcggcctatggtcatgattacaacacctatacgtcttgac
aatctttttgaaaatcttacaacatttttgcatcaacccccgatagaatttccttcttca
gaaattgatttgtcacccgagttagtgaatattgatgctgttgggaagcgcgaccaaatt
ctttatgatctcagtcaagggaaggcaccgctattctatatcaccacattaaaagcactt
ttggagaaaacttcttctcccaagagtacagtgcaacaacaccttgaacttcatgtgggg
gatattttagatccagaaacagtaatagagttatgtaaaaatttagggtatgtgcatgtc
actttagcaagtgaaaaaggagagtttgcctatcgagggggtattgtggatattttccct
ctatcttctcctgaaccttttcgcatagaattttggggagagaaaatcatttctttgcgt
tcttataacccctcgaatcaattatccactgggaaagtattggaaatttccatttcacca
gcaaacaaagaacgctttacagaagaactctctcacactcttttagattatttttgcgaa
cctccgctatacctttttgatgacttagaaattttagaagatgattttgcagcaatttca
ggaacacttgcttctcttcccaaaagattcttccctatcagttatctttatgagcgggct
atgtcatctaaacaaatttactgtgttgaaaaaaaatttcctaatattcaagctctgagt
aacgaacacattaccattgaaatttttaaccgttctatagaagcacgacgatttttcatt
cccttcatttaccctacccctattattgaaaatgaaagtaatcctctgttgactttcctt
aactatctccaagaatacctacctcaacaagaagaggcagtgttaaaactagccatctat
agtacaaaaactaaatccctgaaagaagctcgagctttggcagagacatttgccaataat
cgcacctgtatttatgagaaaaccggcaatctttcctctagttttgccttagctgataca
ggatttgctgctatctcactatcagaattcgcttcaacaaaaatactacgccgacagaaa
caacggacgtattttagcgtagatacagaagaagtgtttgttcctgttcctggagagacg
attgtccaccttcataatgggattggcaaatttttagggatagaaaaaaaacctaatcat
cttaatatcgaaacggattacttggttatagaatatgcggataaagctaagctctatgtt
ccttcggaccaggcacatctgatttctcgttacattgggcctacggacaaaacaactact
ctccataatcttaacagttcaaagtggagacgctctcgagagcttacagaaaaatcttta
attatttatgctgagaagctactccaactagaagcgcagcgttctacaattcaagccttt
gtatacccccctcacggggaagcaatttttaagttcgatgaaagttttccatatgaagag
accccagatcaattaaaagctattgatcaaatttatgcggatatgatgtctacgaagctc
atggacagattaatctgtggggatgcaggatttgggaaaacggaaatcattatgcgggca
gctgtcaaggctgtctgcgatggacatcgtcaggttattgttatggtgcctacgaccatt
ttagccaaccagcattatgagactttcaagcaaagaatggcaggtttgcctatacaaatt
gctgtcctctcgcgattttctcaagctaaagttcaaagagaaatttttgaacgcgttgct
aagggggaaattgatattttgatagggacgcataagcttatcaataaaaatctaaaattt
cataatccgggcttattaattatcgatgaagagcagcgctttggagtaaaaataaaagat
tacctaaaagagcgctaccctaatattgactgccttacagtgtctgcaactcccattccc
agaacattgtatatgtctctagcaggagctagagacctttctgtgattactatgcctccg
ttagacaggcttcctgtgagctcctttattgtagaaaacaaccatgaaacactgtgcgca
gccttgcgtcatgagttgcttcgaggaggacaagcgtatgttattcataatcgcattgaa
accctttatggtcttgcggaaactattcgaaatcttcttcctgaagctcatattggcgtt
gctcatggacagatgttatcagaagatttaagtaggattttcaaaaaatttaaagaccat
caaactaatattcttgtcgccacagcattgatagaaaatggtattgatattcccaatgct
aataccattttaatagaccatgctgataaattcggtatggcggatctctatcaaatgaaa
ggaagggtcggaagatggaatagaaaagcctactgttactttcttgttactgatctaaat
aggttatcaggacctgctgcaaagcgtttggcagcattaaataaacaggagtatggtggg
gggatgaaaatcgccctacatgatttagaaattcgaggtgctggcaacattttaggaaca
gatcaatcggggcacataggcactgttggttttaatctttattgcaagcttttgaaaaaa
gctgttgcgacattaaaaaaccactcgaaacctttacttctgaacgatgatctgaagata
gagttcccctacaattcacgaattcctgacacttatatagacacagcatttatgcgtatc
gaattttatcagaaaattggcaatgcaaagagcaaagaagaactcgaagcaatacaagaa
gaaatgcaagatcgttttggatccttaccacaagcagtttcttggcttctcgcactagct
caaatccgattattcgcactacaacataatatctgtagtatcaaggggacggcaaatgcg
ttgtatctccaacaataccatagcaaaatcgaacagatcaagaaaaccgtgccatatgct
ctatcacctacacccgaacttttggtagttgaagttttagcatgtatacagaaagccttc
ccattaaaatcctctaagtaa
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integrated database retrieval system
