Clostridium saccharobutylicum: CLSA_c01110
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Entry
CLSA_c01110 CDS
T02876
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csb
Clostridium saccharobutylicum
Pathway
csb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLSA_c01110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csb03400
]
CLSA_c01110 (mfd)
Enzymes [BR:
csb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLSA_c01110 (mfd)
DNA repair and recombination proteins [BR:
csb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLSA_c01110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGX41184
UniProt:
U5MK40
LinkDB
All DBs
Position
132940..136440
Genome browser
AA seq
1166 aa
AA seq
DB search
MRLKGLLQPLESSEQFENIIKGIEAKRYPIGVYGTSESGRGYVIDSIFENIDKSMIIATQ
SDMEAKNLYEDLILYTNEVYYFPAKEMVFYNIDAISGDLRWARLKVINEILNKKKKIIVT
SIDSFAAKYTPHKLFVEYSMHLKENDEINIVEISKKLIQSGYERVEMVEGKGQFSLRGGI
LDVFPTCSTYPYRVELFGDEIESIRTFNIESQRSIEKVKKIDIFPAKEIIISEEALSLGR
DRLRDDFEKITSNDKDSERVDKLRKILNKNLESLEEKSSFETIDSYLPYFSETTESFFDY
FKDYFFVVNDVQRCKGKLESIYLEFEENFTAFSQRGDIFPRQGELLISKEEVFESFEGKN
IVFFESLTKANDWLKPFVTVNVSQVTLNNYQGQLDLLIDDILSKKSLGYKTLILSGTRAR
GERLVATLRDRGIESSYRDTIDDIQYGEVVITFGNQLKGFEYPEYKICLISDREVFGEAK
RKIKNKKSKKKGVSKIKSFAELKPGDYVVHANHGIGVYKGIKQIDVAGHKRDYLDIVYDK
GDKLYVPVEQLDLIQKYIGNEGKSPKVNKLGSAEWQKAKAKVRKSINEIAEDLVKLYAMR
TTVKGHKFSKDTEWQKQFEDEFPFEETPDQLTSLEEIKLDMECDKPMDRLLCGDVGYGKT
EVALRAAFKAVMDGKQVALLVPTTILAEQHYKNMKNRFSDFPIKIDMVSRFRTTKQQNET
LKKVKEGNVDILIGTHRLVSKDIQFKDLGLLIVDEEQRFGVKQKEKIKNIKKNIDVLTLS
ATPIPRTLHMSLSGVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGGQVYFV
YNRVEDIERIAKYVQGLVPESKVGIAHGQMAERQLEKEMFDFMAGEYNVLVCTTIIETGM
DIQNVNTIIIYDSDKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKD
FTELGSGFKIAMRDLEIRGAGNMMGSSQHGHMASIGYDLYCRMLEDTVKLIKGEIQKEPV
ETTVDVKVDAFISENYIDDEIQKIEVYKKIAAIDGIEDYNDIKEELEDRYSKIPEPVYNL
MDIAYIKSQAKSIFIEEIKETPKEIIFRFAEGESEYKNIFKSLIEKYKDSVVLKFGLNPY
FAFKLKNIKMENKLEFLKNVFNDIIL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagattgaaggggttattacagcccttggaaagtagtgaacaatttgaaaatattata
aaaggcattgaagcaaaaagatatcctattggtgtttatggaacatcagaatcaggaaga
ggatatgttatagatagtatttttgaaaatatagataaatctatgataattgctacccaa
agtgatatggaagcaaagaatctttatgaagatttaatattgtatactaatgaggtgtac
tactttccggctaaggaaatggttttctataatatagatgctatttcaggagatttaaga
tgggcaagactaaaagtaataaatgaaatattaaataaaaagaaaaaaataatagtaaca
tcaatagattcatttgcagctaaatatactccacataaattatttgtagagtatagcatg
catcttaaagaaaatgatgaaattaatattgtggagatatcaaaaaaattgattcaatca
ggatatgagagagtagaaatggttgaaggaaaaggccaattctcattaagaggtggaatc
ttagatgtgttcccaacatgttcaacttatccatatagagttgaactttttggtgatgaa
atagaatctattagaacatttaatatagaatctcaaagaagtattgagaaggtaaaaaaa
atagatatatttccagcaaaagagataattatatcagaagaagcattatctctcggtcgt
gatagattaagggatgactttgagaaaattacatcaaatgataaagatagtgaaagagta
gataaactaagaaaaatattaaataagaatttagaatcactagaagaaaaatcatctttt
gaaacaatagatagttatttaccatatttctctgaaactacggaaagtttttttgattat
tttaaggattatttttttgtagtaaatgatgttcaaagatgcaagggtaaattggaatca
atatatttagaatttgaagaaaactttactgctttctcgcaaaggggggatatattccca
agacaaggagaacttttaataagtaaagaagaagtgtttgaatcatttgaaggaaaaaat
attgttttctttgaatcattaacaaaggctaatgattggctaaaaccatttgtaacagtt
aatgtatcacaagtaaccttaaataattatcaaggacaattagatttattaattgatgat
atattaagtaaaaaaagtttaggatataaaacgttgatattatctggaacaagggcaaga
ggagaacgtttagttgctacgcttagagatagaggaatagaaagttcttatcgagacaca
attgatgatattcaatatggtgaggttgtaattacatttggaaatcagttaaaaggattt
gaatatcctgaatataaaatatgtttaatatctgatagagaggtatttggagaagcgaag
agaaaaattaaaaataagaaatccaagaaaaaaggggtttctaaaataaaaagttttgct
gaactaaagcctggtgattatgtagttcatgctaatcatggtatcggtgtatataaggga
attaagcaaattgatgttgcaggacacaaaagagattatttagatatcgtgtatgataag
ggagataagctatatgttcctgtagaacagcttgatttaattcaaaagtatattggaaat
gaaggaaagtctccaaaagttaataagcttggaagtgctgaatggcaaaaggcaaaagct
aaagttaggaaatcaattaatgaaatcgcagaggatttagttaagctttatgcaatgaga
acaacagtaaagggacataaattttctaaagatacagaatggcaaaaacaatttgaagat
gaattcccatttgaggaaactccagatcaattaacttcattagaggaaataaagttagat
atggaatgcgataagcctatggatagacttttgtgtggtgatgttggatatggaaaaaca
gaagttgcgttaagggcggcatttaaagcagttatggatggtaagcaagtcgcactttta
gttccaactactattttggcggaacaacattataagaatatgaaaaatagattttctgat
ttccctataaaaatagatatggttagtagatttagaacaacaaaacaacaaaatgaaact
cttaaaaaagtaaaagaaggaaatgtagatattttaataggaacacatagattagtgtct
aaggatattcaatttaaagatttaggacttcttatagtagatgaagagcaaagatttgga
gtgaaacaaaaggaaaagattaaaaatatcaaaaaaaatattgatgttttaaccttgagt
gcaacacctataccaagaactcttcatatgtcattaagcggtgttagagatatttcagtt
atagaaactccaccggaagaaagatatccagttcaaacttatgttgtagaacaaaatgat
cagcttataagagatgcaatacttagagaaataggtagaggtggtcaagtttattttgtt
tataacagagttgaggatattgaaagaatagccaagtatgtacaaggattagttccagaa
agcaaagttggaattgctcatggacaaatggctgaaaggcaactagaaaaagaaatgttt
gactttatggctggagaatacaatgtattggtatgtacaactataatagaaacaggaatg
gatattcaaaatgttaatacaataataatttatgattcagataaaatgggattatcacaa
ctttatcaattaagaggtagagtaggaagatcaaataggatagcatatgcatatctttta
tatacaaaagataaggttttgacagaagttgcagaaaaaaggcttaaagcactaaaagat
tttactgaattaggttctggtttcaagattgctatgagagatcttgaaataagaggtgca
ggtaacatgatgggttcatctcaacatggtcatatggcttcaataggatatgatttatat
tgtaggatgcttgaagatacggttaagttaattaaaggcgaaattcaaaaggagccagta
gaaacaactgtagatgtaaaagttgatgcgtttatatcagaaaactatatagatgacgaa
attcaaaaaatcgaagtgtataagaaaattgccgcaattgatggtatagaagattataat
gatataaaagaagaattagaagacagatattctaaaattccagaaccagtttataattta
atggatattgcatatataaagagccaagctaaatcgatttttatagaagaaataaaggaa
actcctaaagagataatatttagatttgctgagggagagagcgaatacaagaacatattt
aaatctttaattgaaaaatataaagatagtgtagtattaaaatttggattaaatccatat
tttgcatttaaattaaaaaatataaagatggaaaataaattagaattcttgaagaatgta
ttcaatgacataatattgtaa
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