Clostridium saccharobutylicum: CLSA_c12260
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Entry
CLSA_c12260 CDS
T02876
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
csb
Clostridium saccharobutylicum
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csb03400
]
CLSA_c12260 (sbcC)
DNA repair and recombination proteins [BR:
csb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CLSA_c12260 (sbcC)
Archaeal homologous recombinant proteins
CLSA_c12260 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
Fib_alpha
AAA_27
SMC_N
AAA_21
ABC_tran
Imm27
Motif
Other DBs
NCBI-ProteinID:
AGX42229
UniProt:
U5MN45
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All DBs
Position
1384257..1387751
Genome browser
AA seq
1164 aa
AA seq
DB search
MKPIKLRIKGLNSFVEEQTVDFEKLTDRGLFGIFGPTGSGKSTILDGITLALYGDVARKS
SNYINTNCDRLNVSFEFQISGAEVKRYIAEREFKRNKEGNAISGKCKIIDITNVEEQQVL
ADKVGTVNDTVKEIIGLNLDDFTRTVVLPQGKFSEFLKLEGKERREMLERLFNLQKYGEN
LSKKLNGQISKERTNNNILIGQLSGYDDVTVEKLNEKKEELKNSKETLERLKESLEDIEK
QYKESDELWKLSLEFDEYKNKEEILKEKEEEIAQFLEKIKLGEAGEKVIPYINAYENTVN
EFNNNKEELKALNLTISKIIEEKENIEKTWIKAKEDKENKLPQLILHEQKVQDAIEEEKL
LYKIQNDINLLNIEIQKLEHRNKEIEIKLKNIDESIVSKNNEIKEDEKTYEKLRLDESFK
EKVQQGMIEEEKYNNLSLIINKNKEKKNSIVKENDKNIIDGKKLKAKLEEKSEILKAESE
KLKNLIESCPGEQKDLLQLQEVLVINRDKWKNYNKLNKEITSAHVEIKDLENRILAKKQE
LIIINEQLKKLKDEQKIVLRENLAQKLREELNEGEECPVCGSVHHFKENIKPIEVSSLKL
IEDEINNKESFINNINHDIAKYENSFDNFNNKIRLNKEEIDKLGSEFKENSTEELESRFE
KLKNSLEIYTKEKEDLERKINKINNEIIAESGEINALRKVVMASTKQISEIEKDIDDDLK
ELDLIQNKLVLLKDEINVDNFKKKNDEIKESEKRRESIANTIKCNRKKLEELDKMRVNFN
NELTAIKEQLAKNNANLYGFEKNKEEKIKLIKTKVGEEKNLNQLLADLQKEIKYINEIFG
DCENNKTKIEKEFESCNETLIKTNSKCDELNKRVNENHAQLEIAIDSEGFKTLGEVKNNI
IDKVELDKYKEKVELYKDSLSKIKGALESLSKKIDGRKITKEQYEEIMAIRLQKNEEYKQ
HNEIKIKLEEEVKGIKAKVEELKELLDKKKSLDHKLALLNDLEKLFKGKKFVEFVASHQL
KYVSLEASKRLKEITHGNYGLEVDENGKFIIRDYKNGGAARDASTLSGGETFLASLSLAL
SLSAQIQLKGTAPLELFFLDEGFGTLDDELLDVVMSSLEKIHNDKLKVGIISHVESIKNR
IPVKLLITPAECGIGGSRVKIERS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaattaagttgagaattaaaggccttaatagttttgttgaagaacaaactgta
gactttgaaaagttaactgatagaggtctttttggtatatttggaccaacaggaagtgga
aagtccactattttagatggtataactttagctttgtatggagatgttgcgagaaagagc
tctaattatattaatacaaattgcgataggttaaatgttagttttgagtttcaaatatct
ggtgcagaagttaaaagatatattgcagaaagagaatttaaaagaaataaggaaggtaat
gcaatctcaggaaagtgcaaaataattgatataactaatgtggaagaacaacaagtttta
gctgataaggtgggaactgtgaatgacacagttaaggaaataataggacttaatttagat
gattttacaagaactgttgttttacctcaaggaaaatttagtgaatttttaaaacttgag
ggtaaggaaagaagagaaatgcttgaacgattgttcaatcttcaaaaatatggtgaaaat
ctttctaaaaaattaaatggtcaaattagtaaagaaagaactaataataatatattaatt
ggacagcttagtggatatgatgatgtaactgtagagaaattgaatgaaaagaaagaagaa
cttaagaattctaaagaaacattagaaagattaaaggagtcattggaagacatagaaaag
caatataaagaatcagatgaactttggaagcttagtcttgaatttgatgaatataaaaat
aaagaagaaatattgaaagaaaaagaagaagagatagctcaatttttagagaaaattaaa
ttaggagaagcaggagaaaaagttataccatacataaatgcttatgaaaatacggttaat
gaatttaataataataaggaagaattaaaagcattaaatctaacgataagcaaaatcata
gaagaaaaagaaaatatagaaaaaacatggattaaggcaaaagaggataaggaaaataaa
cttccccaattgatattgcatgaacaaaaagtacaggatgctatagaagaagaaaaatta
ttatataaaatacaaaatgatataaatttattaaacatagaaattcaaaagttagaacat
aggaataaggaaattgagataaaacttaaaaatatagatgaaagtattgtttctaaaaat
aatgaaataaaagaagatgaaaagacatatgagaaattaaggcttgatgaaagttttaag
gaaaaagtacagcaaggtatgattgaggaagaaaaatacaataacttaagcttaattatt
aacaaaaataaggaaaagaaaaattcaatagtaaaagagaatgacaaaaatataattgat
ggaaaaaaactaaaagctaaacttgaagaaaagagtgaaatcttaaaggctgaaagtgaa
aaactaaagaatttgatagaaagttgtcctggagaacaaaaagatttattacaattgcaa
gaagtattagttattaacagagataaatggaaaaattataataaattaaataaagaaata
acctccgcacatgttgaaattaaagatttagagaatagaatattagcaaaaaaacaagag
ttaattataataaatgaacaacttaaaaaattaaaagatgagcagaaaatagttttaaga
gaaaatctagcacaaaagcttagagaagagcttaatgaaggcgaagaatgtccagtttgt
ggatcggttcatcattttaaggaaaatataaaacctatagaagtatcaagtttaaaatta
atagaagatgagataaataataaagaatcttttattaataatattaatcatgatatagct
aagtatgaaaatagttttgataattttaataataaaataagactaaataaagaagaaatc
gataagcttggaagtgaattcaaggaaaattcaacagaagaattagaaagtagatttgaa
aaattaaagaattcactagaaatatatacaaaagaaaaagaagatttagagagaaaaatc
aataaaattaataatgaaataatagcagaaagcggagaaataaatgctcttagaaaagtt
gtaatggcaagtactaagcaaataagtgaaattgaaaaagacattgatgatgatttaaag
gaattagatttaatacaaaataaattggtgttattaaaagatgaaattaatgttgataat
ttcaagaaaaaaaatgatgaaataaaagaaagtgaaaaacgtagagaaagtatagctaat
acgataaaatgcaatagaaaaaaattagaagaactagataaaatgagagtgaattttaac
aatgaattaacagctataaaagaacaattggctaaaaataatgctaatctttatggtttt
gaaaagaataaagaagaaaaaattaaattgataaaaacaaaagttggggaagaaaaaaac
ttaaatcaattattggctgaccttcaaaaagaaataaaatatattaatgaaatttttggc
gattgtgaaaataataaaacaaaaatagaaaaagaatttgaatcatgtaatgagacattg
ataaaaacaaacagtaaatgtgatgaacttaataagagagtaaatgaaaatcatgcacag
ttggaaatagctatagattcagaaggttttaaaacattaggggaagttaaaaataatata
attgataaggtagaacttgataaatataaagaaaaagtagaattgtataaggatagttta
tctaaaataaaaggtgcacttgaaagtttatcaaaaaaaatagatggaagaaaaataaca
aaagagcaatatgaggaaataatggctataagacttcaaaagaatgaggaatataagcag
cacaatgaaattaaaattaaacttgaagaagaggtcaagggaataaaagctaaagttgaa
gagttaaaagaacttttagacaaaaagaaaagtttagaccataaattagcgctgttaaat
gatttagaaaaattatttaagggaaagaaatttgttgagtttgtggcatcacatcaatta
aaatatgtttcgttagaagcatccaagagattaaaagaaataacacatggtaattatgga
ttggaagtagatgaaaatggaaaatttataattagagattataaaaatggtggagctgca
agagatgcatcaacactttctggaggggaaacattcttagcatcgttatctctagcatta
tcattatcagcacaaattcagctaaaaggaactgcaccattggaattgttcttcttagac
gagggttttggaacgttggatgacgagttgctagatgtggttatgagttcgctagaaaaa
attcataatgataaattaaaggttggaataataagtcatgttgaaagtataaaaaataga
attccagttaagcttttaattacgccagcggaatgtggaattggaggaagtagagttaaa
attgaaagaagctag
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