Clostridium saccharobutylicum: CLSA_c14080
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Entry
CLSA_c14080 CDS
T02876
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
csb
Clostridium saccharobutylicum
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csb03032
]
CLSA_c14080 (topA)
03400 DNA repair and recombination proteins [BR:
csb03400
]
CLSA_c14080 (topA)
Enzymes [BR:
csb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CLSA_c14080 (topA)
DNA replication proteins [BR:
csb03032
]
Prokaryotic type
DNA Topoisomerases
CLSA_c14080 (topA)
DNA repair and recombination proteins [BR:
csb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CLSA_c14080 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Zn_ribbon_RPB9
Toprim_4
Mre11_C
Lar_restr_allev
Toprim_2
HypA
Motif
Other DBs
NCBI-ProteinID:
AGX42411
UniProt:
U5MS07
LinkDB
All DBs
Position
1583092..1585194
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AA seq
700 aa
AA seq
DB search
MGQKLVIVESPAKAKTIGKYLGKNYIVEASMGHVRDLPKSRLGVDIENNYTPKYITIRGK
GELIDKLRKAAKKADKVYLATDPDREGEAISWHLANILKISEDETCRIVFNEVTKTAVKA
SIKEARKIDLDLVDAQQARRILDRLVGYEISPILWRNVKWGLSAGRVQSAALKLICDREK
EINEFIPKEYWSIDCMLKKDKKKFPIRLSTYKGKKIEIENEESSNKIIEELKDGKFVVKS
IKKGKKNRNPLPPFTTSTLQQDANKKLNFMTKRTMSIAQGLYEGVEVKGYGTVGLITYMR
TDSVRISEEAQIKTKEFIENSYGKEYLPQSTRVYKGKKNIQDAHEAIRPTYVDITPEVAK
ENLTPEQYKLYSLIWKRFVASQMESCELNTNSIDIENGDYKFKASGSIISFDGFMKVYEY
SNEEDEKSVTLPVVEEGEELKEASLKGSQHFTQPAPRYTEASFVKLLEEKGIGRPSTYVP
TISTLLGRNYVVREKKNLIPTELGEIVNNIVSEYFKQIVDVDFTADMEKKLDNVEEGNEN
WTEIVGEFFTPLKAAIEKAEKEISKVVIEDKVSDVKCEKCGRMMVIKRGRYGEFLACPGY
PECKNAKPIVEELDVPCPECGKTIVVKKSKRGKKFFGCSGYPECKFVSWYEPVKEKCPKC
NSYMVLKYSKSKGKYVQCSNSECDYKHEIKEEEENKKEEI
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaaaaacttgtaattgttgagtcgccggcaaaagcaaaaacaatcggcaaatat
ttaggaaagaactatattgtagaggcatcaatgggccatgtaagagatttacctaaaagt
aggttaggtgttgatatagaaaataattatactcccaaatatattactattagaggaaag
ggagaattgatagataaattaagaaaagctgctaaaaaagcagataaagtttatcttgca
actgaccctgatagagagggagaagctatttcatggcatttagctaacatattaaagatt
tcagaagatgaaacgtgtagaatagtttttaatgaagttacaaagactgcagttaaagca
tctataaaagaagcacgcaaaattgatttagatttagttgatgcacagcaagcaagaaga
atattagatagacttgttggatatgagataagtccaattttatggagaaatgtaaaatgg
ggacttagtgctggtagagtacagtctgcagcgttaaagttaatatgtgacagggagaag
gaaataaatgaatttattcctaaagagtattggtcaatagactgtatgcttaagaaggat
aaaaagaagtttccaataaggctttcaacatacaaaggaaagaagattgaaattgaaaat
gaagaatcttcaaataagattattgaagaactgaaagatggaaagtttgttgttaaatca
ataaaaaaaggtaaaaaaaataggaatccgttgccaccttttactacaagtacacttcaa
caagatgcaaataaaaaattaaactttatgactaaaagaactatgtcaatagctcaagga
ctttatgaaggtgtggaagtaaaaggttatggaacagtaggattaataacatatatgaga
actgattctgtaagaatttcagaagaagcacaaattaaaactaaagaatttattgaaaat
tcatatggaaaagaatatttacctcaatctactagagtatataaaggaaaaaagaatatt
caagatgctcatgaagcgataagaccaacttatgtagatataacgccagaagttgcaaaa
gaaaatttaactcctgaacaatataaattatattcattaatttggaaaagatttgtagca
agtcaaatggaatcgtgtgaattaaatactaattcaatagatatagaaaatggcgattac
aaatttaaagcatcaggatctataatttcttttgatggttttatgaaagtatacgaatat
tcaaatgaagaagatgaaaaatcggtaacattgccagttgtagaagaaggggaagaatta
aaggaagcttctcttaaaggaagccaacattttactcagccggcaccaagatataccgaa
gcgtcatttgttaaattactagaggaaaagggaataggtagacctagtacttatgtacct
actatttcaactttgcttgggagaaattatgttgttcgtgaaaagaaaaacttaattcca
actgaacttggagagatagtaaataatattgtaagtgaatattttaagcaaatagtagat
gttgattttacagcagatatggagaaaaaacttgataatgtagaagaaggaaatgaaaat
tggactgaaatagttggagaattttttactcctctaaaggctgcaattgaaaaggctgaa
aaagaaatatcaaaggttgtaattgaagataaagttagtgatgtaaaatgtgaaaaatgt
ggtcgaatgatggttattaaaagaggtagatatggtgaattcttagcgtgtcctggatat
ccagagtgcaaaaatgcgaaacctatagttgaggaactagatgttccatgtccagagtgt
ggaaaaactattgttgtcaagaaaagtaaaagaggcaagaaattctttggatgttctgga
tatccagaatgtaaatttgtgagttggtatgaacctgtaaaagaaaagtgtccaaaatgt
aattcgtatatggtcctaaagtattcaaagtcaaaaggcaaatatgtacaatgttccaat
agtgaatgtgattataaacatgaaattaaagaagaggaagaaaataaaaaagaagaaatt
taa
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