Clostridium saccharobutylicum: CLSA_c17630
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Entry
CLSA_c17630 CDS
T02876
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csb
Clostridium saccharobutylicum
Pathway
csb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLSA_c17630 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csb03019
]
CLSA_c17630 (dbpA)
03009 Ribosome biogenesis [BR:
csb03009
]
CLSA_c17630 (dbpA)
Enzymes [BR:
csb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLSA_c17630 (dbpA)
Messenger RNA biogenesis [BR:
csb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLSA_c17630 (dbpA)
Ribosome biogenesis [BR:
csb03009
]
Prokaryotic type
rRNA helicases
CLSA_c17630 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Helicase_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AGX42757
UniProt:
U5MTH4
LinkDB
All DBs
Position
1964866..1966308
Genome browser
AA seq
480 aa
AA seq
DB search
MNSEFSKFKISEEILKSIEGLGYKKPSEVQEKVIPEILLNKDVIVKSQTGSGKTAAFGIP
LCERIDWEENSPQVLVLSPTRELAVQVSEDISNIGRFKRIKCAAVFGKQPITEQVRTLKQ
KTHVVVGTPGRILDHIDRGSLNVSKVKYFVIDEADEMLNMGFIGQVEGVIRRLPKKKVTM
LFSATIPEEIRELCEKHMDRPLDISIKKQKLITENIEHNLYYVEYERKLENLNDLLICEK
PETGVIFCRTKENVDKVYEYLKSKGYSTNKIHGGMLQKERLSVMENFRKGDFRILVATDL
ASRGIDIEGITHVINFDLPVEKEAYVHRIGRSGRAGAKGKAISFCVKEGDKFLEDIQELI
GFEIPVHKLPNREEVQKEIKQGVEFLKSKPKRKSDKAKIINQNITKIYINGGKKKKIRAG
DIVGAITKIDGVSGDDIGIINVEDNVSYVDILNGKGKRVIDALKNMTIKGKKLNVEKARK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtgaatttagtaaatttaaaataagtgaagaaattttaaaatctattgaaggt
ctaggatataaaaagccatcagaagttcaagaaaaggtaattccagaaatattgttaaat
aaagatgtaatagttaaatcacaaacaggaagtggtaagactgcagcttttggtatacca
ttatgtgaaagaatagattgggaggaaaacagtccacaagttttggttttaagtccaact
agagagcttgcagttcaagttagtgaagatatctctaatataggaagatttaaaaggata
aaatgtgcagcagtctttggtaaacagcctataactgaacaagtgagaactttaaagcaa
aaaactcatgttgttgtaggaacgccaggaagaattttagatcacattgataggggaagt
ttaaatgtatcaaaggttaaatattttgtaatagatgaagcggatgaaatgcttaatatg
ggttttataggtcaggttgaaggcgtgattcgaagacttcctaagaaaaaggttactatg
ctattttcagctactataccagaagaaataagagaattatgtgaaaagcacatggataga
ccacttgatatttcaataaaaaagcaaaaactaataactgaaaatatagagcataattta
tactatgtagaatatgaaaggaaattagaaaatttaaatgatttattaatatgtgaaaaa
cctgaaacaggagttatcttttgtagaacaaaggaaaatgttgataaagtatatgaatat
ttaaaatcgaaagggtattcaactaataaaattcatggaggaatgcttcaaaaagaaaga
cttagtgttatggagaactttagaaaaggcgattttagaattctcgtagctacagattta
gcttcaagagggattgatattgaaggaattactcatgtaataaactttgatttaccagtt
gaaaaggaagcgtatgtacatagaataggaagaagcggacgtgctggagcaaaaggaaag
gcaataagtttttgtgttaaagagggagataaatttttggaggacatacaagaacttata
ggttttgaaatacctgttcacaagctcccaaatagagaagaagttcaaaaagaaattaaa
caaggagtcgagtttcttaaatcaaagccaaagagaaagagcgataaggctaagattata
aatcaaaacataactaaaatatatataaatggtggaaagaaaaagaaaattcgtgcaggg
gatatagtaggagctatcactaaaattgacggtgtaagcggtgatgatattggaataatt
aatgtagaagataatgtatcttatgtagatatattaaatggaaaaggaaaaagagtaata
gatgcattaaaaaatatgactataaaagggaagaaacttaatgtagagaaggcaagaaaa
tag
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